Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1351 ATGCCAGTGCGGCAAATGAAAGAGAGCTCCGAGCAGCACCTTGTAATCAAACCCCATTTTCAGAACAATGTTCAAAAAGCTCCAAAATCAACCCAAAATGGCAAAGGATCGCTGAATATGGAGCCCCAAAACATCAAATCTCGAAGCCCGTCTTCTCCTCCTCCGAGCAAAAACAGGGGCCGGAGAAGAAGCAGAGGCGGCCGGAAGTCCGATCAGGGAGAAGTGTTCATGAGGCCGAGTTCTCGGCCCTGCACGGCGATGCGAAAACCGAATGGACCGGAGAGTATGGAGGGAGCTTTAGTGGAAAGTACTAATCCTATCCCAAATGGTGCAAACACTTGTGGGATGGAATTGGGTTTTCGTAATGCAAGCAAATCTGCGAGTTTTGTACCAAGGCCTGGATTTGGACAAGTTGGAACAAAGTGTATTGTAAAAGCAAATCATTTCTTTGCAGAGTTACCAAACAAAGACTTGAATCAATATGATGTTTCAATTACTCCTGAAGTGGCATCAAGAACTGTGAACAGAGCCATCGTGGCTGAATTGGTGAGATTACACAGAGAATCTGATTTAGGAAAAAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTTTGGAAAGAGTTTAACATCAAGCTTATGGATGAAGATGATGGAGCCAGTGGTCCCAGGAGGGAGAGGGAATACAAAGTAGTTATTAAGTTTGTTGCACGTGCCAATTTACACCATTTGGGCCAGTTTCTTGCTGGTAAGCGCGCGAATGCACCTCAAGAAGCCCTTCAAATACTGGACATTGTATTGAGGGAGCTGCCATCCAAAAGGTACTGTCCTATAGGCAGATCTTTCTTTTCTCCTGATATTAGATCGCCTCAACGGCTCGGTGATGGACTAGAATCATGGTGTGGTTTTTATCAGAGTATAAGACCTACTCAAATGGGACTCTCTCTGAACATTGATATGGCTTCAGCTGCATTTATCGAGCCTCTCCCTGTCCTTGAATCTGTTGCTCAGCTTCTAGGGAAAGATGTTTTGTCCAGGCCATTGTCGGATTCAGATCGCGTAAAGATAAAAAAAGCTCTTAGAGGGGTGAAAGTTGAGGTAACGCACCGGGGTAATGTAAGGCGGAAGTATCGTGTTTCAGGTCTGACATCACAGCCTACAAGAGAATTAGTGTTTCCTGTCGATGACAACTCGACCATGAAGTCAGTTGTTGAATACTTCCAAGAGATGTATGGCTTCACCATTCAATATGCGCATCTCCCTTGCCTTCAAGTAGGGAACCAGAAGAAGGCAAATTATTTACCAATGGAGGCCTGCAAAATTGTAGGGGGGCAAAGATATACAAAGAGATTGAATGAGAAGCAAATAACGGCACTTCTAAAAGTCACATGTCAAAGACCTCGAGATCGAGAAAATGACATTTTGCAGACTGTTCAACATAATGCCTATGACAGTGATCCTTATGCAAAAGAGTTCGGAATTCGAATCAGTGAAAGGATGGCATCTGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTGAAATATCATGACACTGGAAAAGAGAAGGATTGTTTGCCTCAAGTGGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAATCGATGGGCGTGTATAAACTTCTCTAGGAGTGTGCAAGAGAACGTTGCACGTGGATTTTGTTCTGAGCTTGCTCAAATGTGTCAAGTGTCTGGAATGGAATTTAATCCAGAACCAGTTATTCCAATATACAATGCTAGACCAGAACAGGTAGAGAAAGCTTTGAAGCATGTTTATCATGCTTCCATGAACAAGACAAAAGGGAAAGAGTTAGAGCTATTATTAGCTATTTTACCCGACAATAACGGCTCACTTTACGGTGATCTTAAGCGAATTTGTGAAACTGATCTTGGTTTAATATCACAATGCTGTCTTACAAAATATGTGTTCAAGATTAGCAAGCAGTACCTCGCTAACGTTTCACTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTCTAGATGCTATAAGCTGCAGGATACCGCTTGTGAGCGACATACCAACTATTATATTTGGAGCGGACGTGACTCATCCGGAGAACGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTTGTAGCCTCTCAGGATTGGCCTGAAGTGACAAAATATGCTGGACTAGTATGTGCTCAGGCTCATAGACAAGAACTTATACAAGACTTGTACAAAACTTGGCAGGATCCTGTCCGTGGCACCGTCAGCGGTGGCATGATCAGGGATCTTCTGATTTCCTTTAGGAAAGCCACAGGGCAGAAGCCTCTAAGAATAATATTTTACAGGGATGGCGTAAGCGAAGGACAATTCTATCAAGTATTACTTTATGAGTTGGATGCAATCAGAAAGGCATGTGCTTCTTTAGAACCAAATTACCAACCACCCGTCACGTTCATCGTTGTACAAAAACGACACCACACCCGATTGTTTCCCAACAACCATAGAGACAGAAGTAGTACAGACAGGAGTGGAAACATTTTGCCTGGCACCGTAGTTGACTCTAAAATATGTCATCCAACTGAATTTGATTTCTATCTCTGTAGCCATGCTGGAATTCAGGGGACAAGTCGGCCAGCACACTATCATGTTCTTTGGGATGAAAACAATTTTACCGCAGATGGTATTCAGTCATTGACAAACAACCTTTGCTACACGTATGCAAGGTGTACGCGCTCGGTTTCTGTCGTCCCTCCAGCATATTATGCACATTTAGCAGCATTCCGAGCTCGATTCTACATGGAGCCAGAGATGCAGGAGAATGGCTCAGGTGGTCGTTCTGCCAAGAGTACACGTGCTACCGGAGAAACTGGGGTTCGTCCTTTGCCAGCTCTAAAGGATAATGTTAAGCGAGTTATGTTTTACTGTTAG 2964 43.66 MPVRQMKESSEQHLVIKPHFQNNVQKAPKSTQNGKGSLNMEPQNIKSRSPSSPPPSKNRGRRRSRGGRKSDQGEVFMRPSSRPCTAMRKPNGPESMEGALVESTNPIPNGANTCGMELGFRNASKSASFVPRPGFGQVGTKCIVKANHFFAELPNKDLNQYDVSITPEVASRTVNRAIVAELVRLHRESDLGKRLPAYDGRKSLYTAGELPFVWKEFNIKLMDEDDGASGPRREREYKVVIKFVARANLHHLGQFLAGKRANAPQEALQILDIVLRELPSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLESVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQYAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDSDPYAKEFGIRISERMASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQENVARGFCSELAQMCQVSGMEFNPEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKYVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFPNNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSGGRSAKSTRATGETGVRPLPALKDNVKRVMFYC 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49802944 49811152 - Sed0027885.5 Sed02g1351 705019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1351 987 SMART PAZ_2_a_3 341 473 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed02g1351 987 SMART Piwi_a_2 625 946 IPR003165 GO:0003676(InterPro)
Sed02g1351 987 MobiDBLite consensus disorder prediction 1 108 - -
Sed02g1351 987 CDD PAZ_argonaute_like 336 450 - -
Sed02g1351 987 ProSiteProfiles PAZ domain profile. 338 451 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed02g1351 987 MobiDBLite consensus disorder prediction 15 57 - -
Sed02g1351 987 CDD Piwi_ago-like 495 945 IPR045246 -
Sed02g1351 987 Pfam PAZ domain 363 467 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed02g1351 987 Pfam Mid domain of argonaute 534 611 IPR032473 -
Sed02g1351 987 Pfam Argonaute linker 1 domain 285 335 IPR014811 -
Sed02g1351 987 Pfam Piwi domain 626 945 IPR003165 GO:0003676(InterPro)
Sed02g1351 987 Pfam N-terminal domain of argonaute 141 275 IPR032474 -
Sed02g1351 987 Gene3D - 515 688 - -
Sed02g1351 987 Gene3D - 694 987 IPR036397 GO:0003676(InterPro)
Sed02g1351 987 FunFam protein argonaute 10-like 694 987 - -
Sed02g1351 987 Pfam Argonaute linker 2 domain 477 523 IPR032472 -
Sed02g1351 987 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 132 952 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Sed02g1351 987 SUPERFAMILY PAZ domain 331 491 IPR036085 GO:0005515(InterPro)
Sed02g1351 987 MobiDBLite consensus disorder prediction 950 971 - -
Sed02g1351 987 SUPERFAMILY Ribonuclease H-like 613 946 IPR012337 -
Sed02g1351 987 Gene3D paz domain 330 455 - -
Sed02g1351 987 FunFam Protein argonaute-2 330 456 - -
Sed02g1351 987 ProSiteProfiles Piwi domain profile. 625 946 IPR003165 GO:0003676(InterPro)
Sed02g1351 987 FunFam Argonaute 10 515 688 - -
Sed02g1351 987 SMART DUF1785_2 284 336 IPR014811 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1347 Sed-Chr2:49802944 Sed02g1351 Sed-Chr2:49802944 0.00E+00 dispersed
Sed02g1348 Sed-Chr2:49802944 Sed02g1351 Sed-Chr2:49802944 0.00E+00 dispersed
Sed02g1349 Sed-Chr2:49802944 Sed02g1351 Sed-Chr2:49802944 0.00E+00 dispersed
Sed02g1351 Sed-Chr2:49802944 Sed12g0978 Sed-Chr12:6126796 0.00E+00 dispersed
Sed02g1350 Sed-Chr2:49802944 Sed02g1351 Sed-Chr2:49802944 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1351 K11593 - csv:101221352 1857.42