Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1358 ATGGGGGCTTTTATTTCAAGATTCTGGTTCATGTTATTTCCGGCAAAAGAATACAAGATCGTGGTTGTTGGATTGGATAATGCCGGAAAAACGACGACTCTGTACAAATTGCACTTGGGAGAGGTTGTTACTACCCATCCTACGGTTGGAAGCAATGTTGAAGAACTTGTGTATAAGAATATTCGATTCGAGGTTTGGGATCTTGGTGGGCAAGAGAGACTTAGGACCTCATGGGCAACATATTACCGCGGAACTCATGCCGTGATTGCGGTGATAGACAGCACAGATAGAGCGAGAATCACCATTATGAAGGATGAGCTCTTCAGACTACTCAGTCATGAAGATCTTCAGCAATCTGTGGTGCTGGTTTTTGCAAACAAACAGGATCTCAAGGATGCCATGACTCCAGTCGAAATCACCGATGCTCTTTCACTTCACAGCATCAAGAATCACGACTGGCACATCCAAGCCTGCTCTGCCCTCACTGGAGACGGTCTATACGACGGTCTCGGATGGATTGCTCAACGAGTTACTGGTAAAGCCACGAGTTGA 552 46.01 MGAFISRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEVWDLGGQERLRTSWATYYRGTHAVIAVIDSTDRARITIMKDELFRLLSHEDLQQSVVLVFANKQDLKDAMTPVEITDALSLHSIKNHDWHIQACSALTGDGLYDGLGWIAQRVTGKATS 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49873324 49876158 - Sed0026360.1 Sed02g1358 705026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1358 183 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Sed02g1358 183 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed02g1358 183 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed02g1358 183 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed02g1358 183 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed02g1358 183 SMART sar_sub_1 1 177 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed02g1358 183 SMART rab_sub_5 18 180 - -
Sed02g1358 183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 177 IPR027417 -
Sed02g1358 183 NCBIfam small GTP-binding protein domain 16 145 IPR005225 GO:0005525(InterPro)
Sed02g1358 183 ProSiteProfiles small GTPase Rab1 family profile. 1 183 - -
Sed02g1358 183 Gene3D - 6 183 IPR027417 -
Sed02g1358 183 FunFam ADP-ribosylation factor-like protein 5 5 181 - -
Sed02g1358 183 SMART arf_sub_2 1 181 - -
Sed02g1358 183 Pfam ADP-ribosylation factor family 14 176 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed02g1358 183 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 177 IPR024156 GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0005802(PANTHER)|GO:0006886(PANTHER)|GO:0016192(PANTHER)|GO:1903292(PANTHER)
Sed02g1358 183 CDD Arl5_Arl8 3 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1358 K07950 - - csv:101220253 368.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1358 Sed-Chr2:49873324 Sed12g0985 Sed-Chr12:6196959 1.40E-100 dispersed
Sed12g0984 Sed-Chr12:6196959 Sed02g1358 Sed-Chr2:49873324 2.80E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g583 . Blo12g00348 Bda03g00857 . Bpe04g00810 Bpe14g01217 Bma04g00757 Bma05g01086 . . . Cma14g01762 Car06g01176 Car14g01588 Sed02g1358 Cpe08g00297 Cpe03g01478 Bhi01g00744 Tan10g0770 Cmetu06g0372 . Hepe05g1599 . Lcy11g1596 . . . . . . . . . . Cone4ag0280 Lsi05g01651 . . Cme06g00560 Blo02g00594 . . Bda13g00096 Bpe05g00876 . . . . Cmo06g01367 Cmo14g01802 . . . . . . . . . . . . . Cla05g00498 Cam05g0546 Cec05g0559 Cco05g0557 Clacu05g0543 Cmu05g0515 Cre05g0583 . Csa03g01277 Chy06g00529 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006516 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38