Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1362 ATGGAGCCAGGGCGCCGGCCCACGCCCCCGGCCGCTCCGCCGTCCGCCGCCACCATCCTTCTCGGCAAATACCGCTTAGGCCGCCTTCTCGGCCGCGGCAGCTTCGCCAAGGTCTACCAGGCAGTTTCCTTAGTCGACAACTCCATCGTCGCCGTCAAAATCATCGACAAATCCATAACCGTCGACCCCGCCGTTGAACGCTGCATCATCCGGGAAATCGCCGCCATGCACCGCCTCAACCACCCAAACATCCTCAAAATCCATGAAGTTATGGCCTCCAAATCGAAAATCTACCTGGTCGTCGAATTCGCCGCCGGCGGCGAACTCCTAGCCAGAATCATCCGCCGTGGACGTTTCACCGAACCCATTGCTCGCCGGTACTTCCAACAACTCGTATTGGCTCTCCAATTCTGCCACGAAAACGGCGTCGTTCATCGCGATGTGAAGCCGCAGAACCTTCTCCTAGACGAACAGAGAAATTTGAAAATCTCCGATTTCGGTCTCTCTGCTTTAACCGAACCGCTCAAAGACGGTTCGCTGCTCCAAACGGCTTGCGGAACCCCGGCGTACTCCGCGCCGGAGGTCATGCTCCGTCGCGGCGGCGGATACGACGGCGCAACCGCCGACGCCTGGTCGTGTGGAGTTATTTTATTCGTAATGCTCTCTGGATTTAACCCTTTCGACGACGGTAACCTGGCGGAGATGTACAGAAAAATCCACCGGCGTGATTTTAATATCCCTGATTGGGTATCGAAACCCGCCCGGTTCCTGATCCACCACCTACTCGACCCGGATCCGAAAACGAGAATGAGCATGGAGGTTCTAATTCAGAACCCTTGGTTCAAGAAATCGCTGAAATCAGAACAGAGTAATTCGAATCTAGTGCAATCGATGAGGGATTATGGGTTGGGGAAGGAGAAGAGAATTGCGGAGATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATTTGTCGGGGCTGTTTGAGACGGCGGAGGTGGTGGCGGAGAGGAGGTTTACGGCGAGGGAGACGGCAAGGGAGGTGGAGGAGAAGGTGAGAGAGATAGGCGGGGAGTTGGGGTACGAGGTGGCGGCGGCGGGGAAGGGAGGGGCGGTTGGAATGGGGAAGGGGAGGGTGGTGGAAGTGGCGGAGGTGGCGCCGGCGACGGTGACGATGGTGGAGGTGAGGGTGGTGAAAGGTGGGGAGGAGTTTGAGGAGTTGCATTGGAGGTGTTTGGAAGCAAAGCTTCAAGGATTTGCAGTTCCATGGCACAGGAAACTGAACTGTGTTTAA 1299 56.35 MEPGRRPTPPAAPPSAATILLGKYRLGRLLGRGSFAKVYQAVSLVDNSIVAVKIIDKSITVDPAVERCIIREIAAMHRLNHPNILKIHEVMASKSKIYLVVEFAAGGELLARIIRRGRFTEPIARRYFQQLVLALQFCHENGVVHRDVKPQNLLLDEQRNLKISDFGLSALTEPLKDGSLLQTACGTPAYSAPEVMLRRGGGYDGATADAWSCGVILFVMLSGFNPFDDGNLAEMYRKIHRRDFNIPDWVSKPARFLIHHLLDPDPKTRMSMEVLIQNPWFKKSLKSEQSNSNLVQSMRDYGLGKEKRIAEMNAFDIISMSSGLDLSGLFETAEVVAERRFTARETAREVEEKVREIGGELGYEVAAAGKGGAVGMGKGRVVEVAEVAPATVTMVEVRVVKGGEEFEELHWRCLEAKLQGFAVPWHRKLNCV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49918784 49920303 + Sed0006990.1 Sed02g1362 705030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1362 432 Gene3D Transferase(Phosphotransferase) domain 1 106 306 - -
Sed02g1362 432 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 17 398 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed02g1362 432 FunFam Maternal embryonic leucine zipper kinase 16 314 - -
Sed02g1362 432 SMART serkin_6 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1362 432 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Sed02g1362 432 Pfam NAF domain 311 365 IPR004041 GO:0007165(InterPro)
Sed02g1362 432 Pfam Protein kinase domain 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1362 432 Gene3D Kinase associated domain 1, KA1 308 422 - -
Sed02g1362 432 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1362 432 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
Sed02g1362 432 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Sed02g1362 432 CDD CIPK_C 313 415 - -
Sed02g1362 432 SUPERFAMILY Protein kinase-like (PK-like) 20 293 IPR011009 -
Sed02g1362 432 FunFam Aurora kinase A 17 107 - -
Sed02g1362 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1362 Sed-Chr2:49918784 Sed12g2295 Sed-Chr12:33140273 1.60E-86 dispersed
Sed12g0872 Sed-Chr12:5407007 Sed02g1362 Sed-Chr2:49918784 2.50E-29 wgd
Sed02g1362 Sed-Chr2:49918784 Sed09g0727 Sed-Chr9:12388303 7.60E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78821 PF00069 Pkinase 2.80E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1362 K12761 - csv:101217555 592.808