Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1370 ATGGAGGTTAGCCGCAAAATGGTGAATATTCTCGAAACCGATCTCTGTCTCGGTCTGCCCGGCGGTGGTGCAGCCGAGCCCGAGACTCCGAAAGCTAATGGAAAAAGAGGATTCTCTGAGACCGTTGATCTCAAACTCAACATCCAGTCTCAGCCTGGAGTCACCGTGGATCTGGCTCCACAGAATTTGAAGAATAATATCAATACTTCAACTGATGAGGAGAATCTTAGCTCCAAGGATCCTGCTAAGCCACCTGCCAAGGCACAAGTTGTGGGGTGGCCTCCGGTTCGATCTTATCGTAAGAATGCGATGTCTCAAAAGAACCCCGATGGCGGAGAGAAGGGCGGAAGCAGCGGTGGCCCGGCCGTGTTTGTGAAAGTTTGTATGGATGGCGCACCCTATCTCCGAAAGGTGGACCTGAAAATGTACCAAAGCTACCAAGAACTCTCCAACGCCTTGGCCAAGATGTTCAGCTCCTTCACCATGGCTGGTAAATATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAATATGTGCCAAGCTATGAAGACAAGGATGGTGATTGGATGCTGGTGGGAGATGTACCTTGGGAGATGTTTGTTGATTCATGCAAGCGCTTGAGGATAATGAAGGGATCAGAAGCCATTGGACTCGCCCCCCGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 726 49.72 MEVSRKMVNILETDLCLGLPGGGAAEPETPKANGKRGFSETVDLKLNIQSQPGVTVDLAPQNLKNNINTSTDEENLSSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKNPDGGEKGGSSGGPAVFVKVCMDGAPYLRKVDLKMYQSYQELSNALAKMFSSFTMAGKYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49981461 49985120 + Sed0006619.1 Sed02g1370 705038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1370 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 227 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
Sed02g1370 241 Pfam AUX/IAA family 12 232 IPR033389 -
Sed02g1370 241 ProSiteProfiles PB1 domain profile. 122 223 IPR053793 -
Sed02g1370 241 MobiDBLite consensus disorder prediction 61 75 - -
Sed02g1370 241 MobiDBLite consensus disorder prediction 61 90 - -
Sed02g1370 241 FunFam Auxin-responsive protein 117 233 - -
Sed02g1370 241 Gene3D - 118 235 - -
Sed02g1370 241 SUPERFAMILY CAD & PB1 domains 119 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1370 K14484 - - csv:101217325 432.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1370 Sed-Chr2:49981461 Sed12g0993 Sed-Chr12:6342489 2.40E-113 dispersed
Sed02g1368 Sed-Chr2:49950078 Sed02g1370 Sed-Chr2:49981461 2.30E-37 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g604 . Blo12g00354 . . Bpe04g00805 Bpe14g01226 . . Cmo08g01088 Cmo17g00186 Cma06g01344 Cma14g01774 Car06g01165 Car14g01596 . Cpe08g00306 . . . . . . . . Cla06g00625 Cam06g0664 Cec06g0668 Cco06g0674 Clacu06g0652 Cmu06g0645 Cre06g1413 . Cone3ag0696 . . Lsi05g01663 Csa02g01105 Chy05g00364 Cme06g00548 Blo02g00605 Blo07g00243 Bda11g00610 Bda13g00091 . Bpe13g00577 . . Sed02g1370 Cmo06g01355 Cmo14g01811 Cma08g01113 Cma17g00190 Car08g00996 Car17g00168 . . Bhi12g02259 Tan06g2466 Cmetu06g0764 . . . Lcy13g0327 Cla05g00490 Cam05g0534 Cec05g0546 Cco05g0546 Clacu05g0532 Cmu05g0504 Cre05g0572 Lsi09g01278 Csa03g01265 Chy06g00519 Cme05g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000184 9 5 7 6 9 5 10 5 6 6 4 5 11 6 6 10 5 9 3 5 6 6 6 6 6 6 6 7 6 3 190
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37634 PF02309 AUX_IAA 5.00E-80 CL0072 Sed TR