Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1388 ATGAAACCTTCCCGCCTCAATTCCCTCCGGCGAGTCCAGTCCGGCGACCTCGCCATGAAACTCCCCGACGATCCCGACCAATCCCCTAAACCCCAATTCCCCCTCGACCCCACATCTTACACAATCATCGACGAAATCGGCGTCGGCGTCAGCGCCGTCGTCTACAAAGCCCTTTGCATTCCCATGAACTCCACCGTCGTCGCCATCAAAGCCATCGACCTCGATCGATCACGCGCTGATCTCGACGACATTCGACGAGAGGCCAAAACTCTGTCTCTTCTCTCCCACCCCAACATTCTAAACGCCCACTGTTCTTTCACCGTCGACCGGAAGCTTTGGGTCGTAATGCCCTTCATGTCCGCCGGTTCTCTGCAGTCCATCATTACCTCGTCCTTCTCCGACGGCTTGCCCGAGCCCTGCATCGCCGTCGTTCTCCGAGAAATTCTCAACGCTCTGTCGTATCTCCATGATCAAGGTCACCTCCACCGCGACATTAAAGCCGGCAACATTTTGATGGACTCTAATGGGTCGGTTAAGCTTGCTGATTTCGGCGTTTCGGCGTCCATTTTCGAGGCGAGTTCGAAACATGGGGTGACGGTTTCGCCGTCATCGACGTCGATGATGCTGAAAGAAGTCGCTGGAACGCCGTACTGGATGGCGCCGGAGGTGATCCATTCGCATAATGGGTATAGTTTGAAAGCGGATATTTGGTCATTTGGAATCACGGCGTTGGAATTAGCCCATGGACGGCCTCCCCTGTCTCATCTCCCTCCTTCCAAATCTCTACTTTTGAAAATCACGCGGGGTTTTCGATTCTCCGATTACGAAAAACACCGAAACAGCAAGAACAAGAACAAATTCTCAAAAGGGTTCAAGGAATTGGTCGCGGCTTGCCTCGATCAAGAGCCATCGAGAAGGCCGTGCGCCCAAAAATTGCTCAAACATTCGTTCTTCAGAAACTGCAAGGGGCCAGATCTTCTAGTGAAGAATGTACTGCAGGGTATACCGAGCGTGGAAGAGCGTTTCAAATTGGGGAAATTGCAGCGATTGCCGTCGATGAACACCGACGAAGACGAGGAAGAGGAATTGGAGAAGGAGATTATAAAACAGAGGAGGATCAGTGGTTGGAACTTCAACGAGGATGGCCTAGAGCTCGACCCTGTTTGCGAGGAGGAGGACGGTTCGATTACAAAAGAGGTTCGGTTCGGAGGGGAATCGATGATGGAGGAGAAGGGGTCGGGGGGATCGAGCGAGTGCTGCTCGGGGGTGTCGAATGCGAGCTCGCCGACGGGGAACGGGGAGGGGGTTGTGGATAGGGAGTGCATAGTTGGGGGGTTGATGGCATTGAAGAGGAGCTTGGATGAGCAGAGGAGGGCAGTGGGGGGTTTGATAGAGGTTATGGAAGGGGACAAAGGGGGGCAGATGAGCAGAGAGGAGCAGATGGGGAGAATTATAGAAAAGATGACAAGAGAATTGGAGATTGAAAGGAAAAGGAACTTTGAATTGGAGATGGAATTGGAGTTTATTAGGCTTCAAATTTCTGCTGCTTCTGCTTCTAATGTCATTGATATATAA 1575 52.13 MKPSRLNSLRRVQSGDLAMKLPDDPDQSPKPQFPLDPTSYTIIDEIGVGVSAVVYKALCIPMNSTVVAIKAIDLDRSRADLDDIRREAKTLSLLSHPNILNAHCSFTVDRKLWVVMPFMSAGSLQSIITSSFSDGLPEPCIAVVLREILNALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSASIFEASSKHGVTVSPSSTSMMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRGFRFSDYEKHRNSKNKNKFSKGFKELVAACLDQEPSRRPCAQKLLKHSFFRNCKGPDLLVKNVLQGIPSVEERFKLGKLQRLPSMNTDEDEEEELEKEIIKQRRISGWNFNEDGLELDPVCEEEDGSITKEVRFGGESMMEEKGSGGSSECCSGVSNASSPTGNGEGVVDRECIVGGLMALKRSLDEQRRAVGGLIEVMEGDKGGQMSREEQMGRIIEKMTRELEIERKRNFELEMELEFIRLQISAASASNVIDI 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50091984 50093628 + Sed0010174.1 Sed02g1388 705056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1388 524 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Sed02g1388 524 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Sed02g1388 524 Coils Coil 353 373 - -
Sed02g1388 524 MobiDBLite consensus disorder prediction 417 432 - -
Sed02g1388 524 SUPERFAMILY Protein kinase-like (PK-like) 39 337 IPR011009 -
Sed02g1388 524 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1388 524 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 32 401 IPR047173 GO:0043539(InterPro)|GO:1902456(PANTHER)
Sed02g1388 524 Gene3D Transferase(Phosphotransferase) domain 1 122 369 - -
Sed02g1388 524 FunFam Serine/threonine-protein kinase BLUS1 29 118 - -
Sed02g1388 524 Coils Coil 485 505 - -
Sed02g1388 524 SMART serkin_6 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1388 524 MobiDBLite consensus disorder prediction 407 433 - -
Sed02g1388 524 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1388 K08835 - - csv:101215648 807.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1388 Sed-Chr2:50091984 Sed06g0544 Sed-Chr6:4774716 1.80E-92 dispersed
Sed02g1388 Sed-Chr2:50091984 Sed06g0543 Sed-Chr6:4774716 1.80E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2410 . 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 60.9 9.7e-216 747.7
Sed05g2557 . 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 60.5 5.9e-213 738.4
Sed07g2041 . 253 513 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.0e-67 255.0
Sed04g2410 . 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 63.0 1.8e-225 780.0
Sed05g2557 . 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 60.8 9.8e-216 747.7
Sed07g2041 . 253 513 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 8.9e-68 256.1
Sed07g2041 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.8 3.3e-239 825.9
Sed04g2410 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.0 1.5e-66 252.3
Sed03g0133 . 1 659 MAP Kinase Kinase Kinase Kinase AT5G14720 67.9 9.1e-251 864.0
Sed03g0134 . 1 659 MAP Kinase Kinase Kinase Kinase AT5G14720 67.9 9.1e-251 864.0
Sed06g0543 . 31 615 MAP Kinase Kinase Kinase Kinase AT5G14720 56.3 2.6e-189 659.8
Sed06g0544 . 31 621 MAP Kinase Kinase Kinase Kinase AT5G14720 55.8 1.9e-187 653.7
Sed03g0135 . 2 519 MAP Kinase Kinase Kinase Kinase AT5G14720 64.4 3.9e-177 619.4
Sed04g0924 . 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 63.4 5.8e-243 838.2
Sed04g0925 . 7 723 MAP Kinase Kinase Kinase Kinase AT4G24100 63.2 4.9e-242 835.1
Sed04g0926 . 1 653 MAP Kinase Kinase Kinase Kinase AT4G24100 62.4 3.0e-215 746.1
Sed06g0543 . 31 379 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 1.4e-132 471.5
Sed06g0544 . 31 379 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 1.4e-132 471.5
Sed04g0924 . 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.3 2.9e-244 842.4
Sed04g0925 . 11 724 MAP Kinase Kinase Kinase Kinase AT4G10730 64.1 6.5e-244 841.3
Sed04g0926 . 1 654 MAP Kinase Kinase Kinase Kinase AT4G10730 63.1 1.2e-216 750.7
Sed05g1387 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 61.5 1.6e-129 461.1
Sed04g0924 . 5 368 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 6.2e-118 422.5
Sed04g0925 . 5 368 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 6.2e-118 422.5
Sed05g1388 . 1 305 MAP Kinase Kinase Kinase Kinase AT1G70430 62.9 6.0e-113 406.0
Sed04g0926 . 1 301 MAP Kinase Kinase Kinase Kinase AT1G70430 60.9 1.7e-102 371.3
Sed05g1387 . 1 684 MAP Kinase Kinase Kinase Kinase AT1G79640 59.4 9.1e-211 731.1
Sed06g2046 . 1 649 MAP Kinase Kinase Kinase Kinase AT1G79640 58.0 1.2e-202 704.1
Sed05g1388 . 1 622 MAP Kinase Kinase Kinase Kinase AT1G79640 57.9 2.1e-183 640.2
Sed06g0543 . 31 378 MAP Kinase Kinase Kinase Kinase AT1G79640 68.4 3.9e-145 513.1
Sed06g0544 . 31 378 MAP Kinase Kinase Kinase Kinase AT1G79640 68.4 3.9e-145 513.1
Sed03g0133 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 9.2e-104 375.2
Sed03g0134 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 9.2e-104 375.2
Sed06g0543 . 26 352 MAP Kinase Kinase Kinase Kinase AT1G23700 57.6 6.4e-97 352.4
Sed06g0544 . 26 352 MAP Kinase Kinase Kinase Kinase AT1G23700 57.6 6.4e-97 352.4
Sed05g1387 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.6e-85 312.8
Sed04g0924 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 2.4e-75 280.8
Sed04g0925 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 2.4e-75 280.8
Sed05g1388 . 3 262 MAP Kinase Kinase Kinase Kinase AT1G23700 54.4 6.9e-75 279.3
Sed04g0926 . 1 239 MAP Kinase Kinase Kinase Kinase AT1G23700 53.7 1.4e-64 245.0
Sed03g0135 . 2 188 MAP Kinase Kinase Kinase Kinase AT1G23700 56.3 2.6e-50 197.6
Sed02g1388 . 30 496 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 1.5e-141 500.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78823 PF00069 Pkinase 6.10E-58 CL0016 Sed PK