Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1388 ATGAAACCTTCCCGCCTCAATTCCCTCCGGCGAGTCCAGTCCGGCGACCTCGCCATGAAACTCCCCGACGATCCCGACCAATCCCCTAAACCCCAATTCCCCCTCGACCCCACATCTTACACAATCATCGACGAAATCGGCGTCGGCGTCAGCGCCGTCGTCTACAAAGCCCTTTGCATTCCCATGAACTCCACCGTCGTCGCCATCAAAGCCATCGACCTCGATCGATCACGCGCTGATCTCGACGACATTCGACGAGAGGCCAAAACTCTGTCTCTTCTCTCCCACCCCAACATTCTAAACGCCCACTGTTCTTTCACCGTCGACCGGAAGCTTTGGGTCGTAATGCCCTTCATGTCCGCCGGTTCTCTGCAGTCCATCATTACCTCGTCCTTCTCCGACGGCTTGCCCGAGCCCTGCATCGCCGTCGTTCTCCGAGAAATTCTCAACGCTCTGTCGTATCTCCATGATCAAGGTCACCTCCACCGCGACATTAAAGCCGGCAACATTTTGATGGACTCTAATGGGTCGGTTAAGCTTGCTGATTTCGGCGTTTCGGCGTCCATTTTCGAGGCGAGTTCGAAACATGGGGTGACGGTTTCGCCGTCATCGACGTCGATGATGCTGAAAGAAGTCGCTGGAACGCCGTACTGGATGGCGCCGGAGGTGATCCATTCGCATAATGGGTATAGTTTGAAAGCGGATATTTGGTCATTTGGAATCACGGCGTTGGAATTAGCCCATGGACGGCCTCCCCTGTCTCATCTCCCTCCTTCCAAATCTCTACTTTTGAAAATCACGCGGGGTTTTCGATTCTCCGATTACGAAAAACACCGAAACAGCAAGAACAAGAACAAATTCTCAAAAGGGTTCAAGGAATTGGTCGCGGCTTGCCTCGATCAAGAGCCATCGAGAAGGCCGTGCGCCCAAAAATTGCTCAAACATTCGTTCTTCAGAAACTGCAAGGGGCCAGATCTTCTAGTGAAGAATGTACTGCAGGGTATACCGAGCGTGGAAGAGCGTTTCAAATTGGGGAAATTGCAGCGATTGCCGTCGATGAACACCGACGAAGACGAGGAAGAGGAATTGGAGAAGGAGATTATAAAACAGAGGAGGATCAGTGGTTGGAACTTCAACGAGGATGGCCTAGAGCTCGACCCTGTTTGCGAGGAGGAGGACGGTTCGATTACAAAAGAGGTTCGGTTCGGAGGGGAATCGATGATGGAGGAGAAGGGGTCGGGGGGATCGAGCGAGTGCTGCTCGGGGGTGTCGAATGCGAGCTCGCCGACGGGGAACGGGGAGGGGGTTGTGGATAGGGAGTGCATAGTTGGGGGGTTGATGGCATTGAAGAGGAGCTTGGATGAGCAGAGGAGGGCAGTGGGGGGTTTGATAGAGGTTATGGAAGGGGACAAAGGGGGGCAGATGAGCAGAGAGGAGCAGATGGGGAGAATTATAGAAAAGATGACAAGAGAATTGGAGATTGAAAGGAAAAGGAACTTTGAATTGGAGATGGAATTGGAGTTTATTAGGCTTCAAATTTCTGCTGCTTCTGCTTCTAATGTCATTGATATATAA 1575 52.13 MKPSRLNSLRRVQSGDLAMKLPDDPDQSPKPQFPLDPTSYTIIDEIGVGVSAVVYKALCIPMNSTVVAIKAIDLDRSRADLDDIRREAKTLSLLSHPNILNAHCSFTVDRKLWVVMPFMSAGSLQSIITSSFSDGLPEPCIAVVLREILNALSYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSASIFEASSKHGVTVSPSSTSMMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRGFRFSDYEKHRNSKNKNKFSKGFKELVAACLDQEPSRRPCAQKLLKHSFFRNCKGPDLLVKNVLQGIPSVEERFKLGKLQRLPSMNTDEDEEEELEKEIIKQRRISGWNFNEDGLELDPVCEEEDGSITKEVRFGGESMMEEKGSGGSSECCSGVSNASSPTGNGEGVVDRECIVGGLMALKRSLDEQRRAVGGLIEVMEGDKGGQMSREEQMGRIIEKMTRELEIERKRNFELEMELEFIRLQISAASASNVIDI 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50091984 50093628 + Sed0010174.1 Sed02g1388 705056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1388 524 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Sed02g1388 524 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Sed02g1388 524 Coils Coil 353 373 - -
Sed02g1388 524 MobiDBLite consensus disorder prediction 417 432 - -
Sed02g1388 524 SUPERFAMILY Protein kinase-like (PK-like) 39 337 IPR011009 -
Sed02g1388 524 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1388 524 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 32 401 IPR047173 GO:0043539(InterPro)|GO:1902456(PANTHER)
Sed02g1388 524 Gene3D Transferase(Phosphotransferase) domain 1 122 369 - -
Sed02g1388 524 FunFam Serine/threonine-protein kinase BLUS1 29 118 - -
Sed02g1388 524 Coils Coil 485 505 - -
Sed02g1388 524 SMART serkin_6 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1388 524 MobiDBLite consensus disorder prediction 407 433 - -
Sed02g1388 524 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1388 Sed-Chr2:50091984 Sed06g0544 Sed-Chr6:4774716 1.80E-92 dispersed
Sed02g1388 Sed-Chr2:50091984 Sed06g0543 Sed-Chr6:4774716 1.80E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78823 PF00069 Pkinase 6.10E-58 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1388 K08835 - csv:101215648 807.364