Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1392 ATGGCCAATAATCCTTGGTGGACAACTCAATTGGGGTTGCCGGGAGTGGTGGATCACCACTCCACGGTTGACAACTCAACCATCTTCAATCAAAACGATGAAAATAGCGGTGGCGGAAGCGACGGCGACGACGACAACAACAACCGCGACGAGGCACAAGAAGGAGCGGTCGAGGCCGGAACACGTAGGCCAAGAGGCCGTCCACCTGGATCCAAAAACAAACCAAAACCCCCAATCTTCGTCACACGTGACAGCCCCAACGCCCTGCGGAGCTACGTCCTAGAGGTCGCCGCCGGATCCGACGTGGCGGATTCCATCGCCCAATTCGCACGTAAGCGCCAGCGTGGCGTGTGCGTCCTCAGTGCAACCGGCTTGGTCGCCAACGTCACCTTACGTCAGCCAGCCGCCCCCGGTTCAGTAATGCCACTCCAAGGAAGGTTCGAGATTCTTTCTTTGACCGGTGCGTTTCTACCCGGCCCAGCCCCACCCGGTTCGACCGGGCTGACCGTTTACTTGTCCGGCGGGCAGGGGCAGGTTGTCGGCGGTAGCGTTGTGGGGCCGCTTGTGGCGGCCGGACCTATCATGATAATTGCGGCCACTTTTGCTAATGCCACGTATGAAAGGTTGCCGCTTGATGATTCCGAGGATCATGAAGTCGGCAGTGGCTCCGCCTCGCACGGCGGCGGCGGTAGAAGCCCGCCGCCGCCGCAGATGCCGACTGGGATGTCGGAACCGAATTTGCCGTTGTATAATTTACTGCCGGAGATGATTCCCAACGGCGGCGTTCAGCTTGGCCACGACGGGTATGGTTATGTTCGGCCACCGTATTGA 831 59.45 MANNPWWTTQLGLPGVVDHHSTVDNSTIFNQNDENSGGGSDGDDDNNNRDEAQEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGPLVAAGPIMIIAATFANATYERLPLDDSEDHEVGSGSASHGGGGRSPPPPQMPTGMSEPNLPLYNLLPEMIPNGGVQLGHDGYGYVRPPY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50143157 50144330 - Sed0027564.1 Sed02g1392 705060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1392 276 PIRSF ESCAROLA 13 275 IPR014476 GO:0003680(InterPro)
Sed02g1392 276 Gene3D - 89 219 - -
Sed02g1392 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 269 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed02g1392 276 MobiDBLite consensus disorder prediction 213 247 - -
Sed02g1392 276 CDD DUF296 90 172 IPR005175 -
Sed02g1392 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 202 IPR005175 -
Sed02g1392 276 FunFam AT-hook motif nuclear-localized protein 89 217 - -
Sed02g1392 276 MobiDBLite consensus disorder prediction 43 61 - -
Sed02g1392 276 MobiDBLite consensus disorder prediction 26 84 - -
Sed02g1392 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 215 - -
Sed02g1392 276 ProSiteProfiles PPC domain profile profile. 86 227 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1392 Sed-Chr2:50143157 Sed08g1584 Sed-Chr8:30942651 8.20E-81 dispersed
Sed12g1013 Sed-Chr12:6513577 Sed02g1392 Sed-Chr2:50143157 2.60E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1392 - - - 0.0