Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1399 | ATGGATCCATTGGAGGATCCGACCTGTTGGGATTTCCTCGATTACTCCTTGTTCGCCGCCGACGACACCTTTGCTAACCCTTCGCTCGATCCATTGTGGCCGCCTAACGATTCCAGGGATGGTGGTGCGGATGCGGATGCGGATGTTTCAGCCGGCCGTGTTGAATCTGAAGAAAACGATTGTTCGCGCAAGAGGGGACGAGATGGGTCGTGTGCTGGACCAACTTCAAAAGCTTGTCGTGAGAAGTTGCGGAGAGACAAATTAAATGATAGGTTTCTAGATTTGAGCCATGCTTTAGAACCCGTCAGACCTTCCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGACTGAAGCCGAAGAGCTCGAACAAACTAATAAAAAACTACGGGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATATTCGTAAAGAGAAGAACATTTTGAAGGCGGACAAAGAAAGAATTGAGCAACAGTTGAAATCTGTAGCCATTCCATCGCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATCATGCAGCTCCAGGTAAGATGGCTGTTTTTCCTGGCTATGGTTTGATACCAATGTGGCAATATCTTCCTCCATCGGTATGCGATACCTCTCGAGATCATGAGCTCAGGCCCCCTGCTGCTTAG | 687 | 47.45 | MDPLEDPTCWDFLDYSLFAADDTFANPSLDPLWPPNDSRDGGADADADVSAGRVESEENDCSRKRGRDGSCAGPTSKACREKLRRDKLNDRFLDLSHALEPVRPSKTNKPAILDDAIRVLNQLKTEAEELEQTNKKLREEVECLKAEKNDIRKEKNILKADKERIEQQLKSVAIPSPGLIPGHPAAYHHAAPGKMAVFPGYGLIPMWQYLPPSVCDTSRDHELRPPAA | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50177074 | 50187502 | - | Sed0001786.1 | Sed02g1399 | 705067 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1399 | 228 | MobiDBLite | consensus disorder prediction | 41 | 67 | - | - | |
Sed02g1399 | 228 | MobiDBLite | consensus disorder prediction | 26 | 76 | - | - | |
Sed02g1399 | 228 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 72 | 123 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1399 | 228 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 75 | 142 | IPR036638 | GO:0046983(InterPro) | |
Sed02g1399 | 228 | Pfam | Helix-loop-helix DNA-binding domain | 76 | 124 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1399 | 228 | Gene3D | - | 75 | 156 | IPR036638 | GO:0046983(InterPro) | |
Sed02g1399 | 228 | SMART | finulus | 78 | 129 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1399 | 228 | CDD | bHLH_AtILR3_like | 77 | 152 | - | - | |
Sed02g1399 | 228 | PANTHER | BHLH TRANSCRIPTION FACTOR | 47 | 228 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Sed02g1399 | 228 | Coils | Coil | 113 | 168 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1399 | Sed-Chr2:50177074 | Sed07g2654 | Sed-Chr7:41976708 | 3.30E-27 | dispersed | |
Sed02g1399 | Sed-Chr2:50177074 | Sed04g3178 | Sed-Chr4:42510963 | 1.70E-31 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37638 | PF00010 | HLH | 1.70E-07 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1399 | - | - | - | 0.0 |