Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1399 ATGGATCCATTGGAGGATCCGACCTGTTGGGATTTCCTCGATTACTCCTTGTTCGCCGCCGACGACACCTTTGCTAACCCTTCGCTCGATCCATTGTGGCCGCCTAACGATTCCAGGGATGGTGGTGCGGATGCGGATGCGGATGTTTCAGCCGGCCGTGTTGAATCTGAAGAAAACGATTGTTCGCGCAAGAGGGGACGAGATGGGTCGTGTGCTGGACCAACTTCAAAAGCTTGTCGTGAGAAGTTGCGGAGAGACAAATTAAATGATAGGTTTCTAGATTTGAGCCATGCTTTAGAACCCGTCAGACCTTCCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGACTGAAGCCGAAGAGCTCGAACAAACTAATAAAAAACTACGGGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATATTCGTAAAGAGAAGAACATTTTGAAGGCGGACAAAGAAAGAATTGAGCAACAGTTGAAATCTGTAGCCATTCCATCGCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATCATGCAGCTCCAGGTAAGATGGCTGTTTTTCCTGGCTATGGTTTGATACCAATGTGGCAATATCTTCCTCCATCGGTATGCGATACCTCTCGAGATCATGAGCTCAGGCCCCCTGCTGCTTAG 687 47.45 MDPLEDPTCWDFLDYSLFAADDTFANPSLDPLWPPNDSRDGGADADADVSAGRVESEENDCSRKRGRDGSCAGPTSKACREKLRRDKLNDRFLDLSHALEPVRPSKTNKPAILDDAIRVLNQLKTEAEELEQTNKKLREEVECLKAEKNDIRKEKNILKADKERIEQQLKSVAIPSPGLIPGHPAAYHHAAPGKMAVFPGYGLIPMWQYLPPSVCDTSRDHELRPPAA 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50177074 50187502 - Sed0001786.1 Sed02g1399 705067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1399 228 MobiDBLite consensus disorder prediction 41 67 - -
Sed02g1399 228 MobiDBLite consensus disorder prediction 26 76 - -
Sed02g1399 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 123 IPR011598 GO:0046983(InterPro)
Sed02g1399 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 142 IPR036638 GO:0046983(InterPro)
Sed02g1399 228 Pfam Helix-loop-helix DNA-binding domain 76 124 IPR011598 GO:0046983(InterPro)
Sed02g1399 228 Gene3D - 75 156 IPR036638 GO:0046983(InterPro)
Sed02g1399 228 SMART finulus 78 129 IPR011598 GO:0046983(InterPro)
Sed02g1399 228 CDD bHLH_AtILR3_like 77 152 - -
Sed02g1399 228 PANTHER BHLH TRANSCRIPTION FACTOR 47 228 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Sed02g1399 228 Coils Coil 113 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1399 Sed-Chr2:50177074 Sed07g2654 Sed-Chr7:41976708 3.30E-27 dispersed
Sed02g1399 Sed-Chr2:50177074 Sed04g3178 Sed-Chr4:42510963 1.70E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37638 PF00010 HLH 1.70E-07 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1399 - - - 0.0