Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1401 ATGGATTCCTTACCCAATTCTTCCCATTCCAATTCCAGCAGCTTCCCCATTATCGCCATTGCCATCATCGGAATCCTCGCCACTGCCTTTTTACTCGTCAGCTACTACGTTTTCGTCATCAATTGCTGCCTCAACTGGCACCGCATCGATCTCCTCCGCCGCCTCTCTCTGTCTTCACGGCGGCGCCGCCCTCCCTCCGCCGCCCCCTCCCCGCCTGTCCACACCCGCGGCCTCGAAGAATCGCTCATTAGATCGATCCCTTTACTCCAATACAAGAAAGCGAAAACCAGAGGAAAAGGCTCCGCCGAATGCGCCGTTTGTTTGAGCGAATTCGAAGAGGATGAGACCCTGAGGATTATTCCGATTTGTTCCCATCTTTTCCACATCGATTGTATAGATATTTGGCTTCAGAACAATCCCAATTGCCCGCTCTGTCGAACCACCATTTCGAGCTCTGTTCTCTTTCGTGAATTTCCCCTACCATGCTTCTCGCCGGAGAATGCCGCCGCCGCCGGAGATGAGAGGGATTTTGTTGTGATTGAATTGGGTGGGATTGGGACCGACCCATCTGGTCAATTTTCCCAAGAGCGGTTGAATTCTGGGGAATTGCCGGCGGCGGTGGCCTGGAAATTGGAACAGGGGAAGAAGCGGTGGAGGTTGCAGAAAGTGACGAGTTTAGGGGATGAGTGGATTGATACGAGGGAGAAAGATGAGCAATTTTGTGTTCAGCCAATTCGACGGTCGGTTTCGATGGATTCGTCGGCGGAGCGGCAGATGTATTTGGCGGTGCAGGCGGCGGTGCAGCAGAGCCGCCGTGGGAATCCGGCGAGTCCCGGCGGCGATGGGTGTAGTGGAAGAGGGAGGAGACAAGCATAA 876 54.34 MDSLPNSSHSNSSSFPIIAIAIIGILATAFLLVSYYVFVINCCLNWHRIDLLRRLSLSSRRRRPPSAAPSPPVHTRGLEESLIRSIPLLQYKKAKTRGKGSAECAVCLSEFEEDETLRIIPICSHLFHIDCIDIWLQNNPNCPLCRTTISSSVLFREFPLPCFSPENAAAAGDERDFVVIELGGIGTDPSGQFSQERLNSGELPAAVAWKLEQGKKRWRLQKVTSLGDEWIDTREKDEQFCVQPIRRSVSMDSSAERQMYLAVQAAVQQSRRGNPASPGGDGCSGRGRRQA 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50198542 50199601 - Sed0004688.1 Sed02g1401 705069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1401 291 PANTHER RING-H2 FINGER PROTEIN ATL16 5 286 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Sed02g1401 291 CDD RING-H2_EL5-like 103 146 - -
Sed02g1401 291 MobiDBLite consensus disorder prediction 265 291 - -
Sed02g1401 291 Pfam Ring finger domain 103 146 IPR001841 -
Sed02g1401 291 FunFam E3 ubiquitin-protein ligase ATL6 68 152 - -
Sed02g1401 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 152 IPR013083 -
Sed02g1401 291 SMART ring_2 104 145 IPR001841 -
Sed02g1401 291 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Sed02g1401 291 SUPERFAMILY RING/U-box 103 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1401 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1401 Sed-Chr2:50198542 Sed12g0332 Sed-Chr12:2087502 1.20E-26 dispersed
Sed07g1865 Sed-Chr7:27915722 Sed02g1401 Sed-Chr2:50198542 1.30E-11 transposed
Sed12g1027 Sed-Chr12:6588990 Sed02g1401 Sed-Chr2:50198542 1.00E-92 wgd
Sed02g1401 Sed-Chr2:50198542 Sed05g0105 Sed-Chr5:627413 3.50E-58 wgd
Sed02g1401 Sed-Chr2:50198542 Sed09g0691 Sed-Chr9:10136356 7.80E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g674 Blo01g00093 . Bda03g00844 . Bpe04g00798 . Bma04g00744 Bma05g01070 . Cmo17g00166 Cma06g01332 . . . . . . . . . . . . . Cla06g00655 Cam06g0700 Cec06g0705 Cco06g0713 Clacu06g0687 Cmu06g0678 Cre06g1447 Cone14ag0146 Cone15ag0155 Cone7ag0316 Cone4ag0321 Lsi05g01721 Csa02g01073 Chy05g00333 Cme06g00503 . . . . Bpe05g00861 . . . Sed02g1401 Cmo06g01336 . Cma08g01088 Cma17g00169 Car08g00963 Car17g00148 Cpe12g00145 Cpe17g00190 Bhi12g01632 Tan06g2420 Cmetu06g0958 Lac12g2188 Hepe03g0272 . Lcy13g0365 Cla05g00454 Cam05g0495 Cec05g0504 Cco05g0503 Clacu05g0490 Cmu05g0467 Cre05g0530 Lsi09g01242 . Chy06g00482 Cme05g00554
Vvi7g540 . . . . . . . . . . Cma02g01753 . Car02g01502 . . . . . . . . . . . . . . . . . . . . . . . . Chy04g01059 . . . Bda12g00717 . . . . . Sed02g1401 Cmo02g01797 . . . . . Cpe05g00058 . Bhi12g01632 Tan06g2420 Cmetu06g0958 Lac12g2188 Hepe03g0272 . Lcy13g0365 Cla07g00092 Cam07g0097 Cec07g0129 Cco07g0100 Clacu07g0090 Cmu07g0154 Cre07g0462 . Csa03g02251 . Cme04g01032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002450 1 1 1 2 2 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 1 2 2 2 2 2 2 3 2 1 61