Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1404 | ATGGATTACTCTGTATTCTTCTCCCAGTATTCGGATATCTCTACCGAATCGTCGTTCGGTTCGCCGGAATCGTCGTTCATGAATTCAGACCAAAATTTCCTTCCTTTCAATGAGAATGATTCGGAAGAAATGCTTTTGTATGGGCTGATCTCAGAGGGGACTCTCGGGGGTAGCGGGCCGGTGCGAGTCAAGGAAGAGGAGGTCGATTCGGTCCGCGAAGCCAGCCCGAAAAGGGAGAAGGCTTACAGAGGAGTTCGCCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTAGAGACTCCACCAGACATGGCATTAGGGTCTGGTTGGGGACTTTCGACAGCGCCGAAGCTGCTGCTTTAGCATACGATCAAGCCGCTTTTTCGATGCGCGGAGCCGCCGCGATCCTCAATTTTCCCGTTGAGAGAGTTAGGGAGTCCCTCAAGGAGATGAACTCCGGCGGCGATGGTTTCGCCGACGACGGCGGGTCTCCGGTGATTGCGTTGAAAAGGAAACACTCCATCAAAAGGAAAGCCATTAGTAAAAAGAGCAAAGAAAGAGATGCGAGGATTCAAAATATGGTGGTTTTTGAGGATTTAGGACCAGAGTATTTGGAAGAGCTTTTGGGATCTTCTCAAAGTGGTAGTTCTTGTTCTTTCTAA | 660 | 50.91 | MDYSVFFSQYSDISTESSFGSPESSFMNSDQNFLPFNENDSEEMLLYGLISEGTLGGSGPVRVKEEEVDSVREASPKREKAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVERVRESLKEMNSGGDGFADDGGSPVIALKRKHSIKRKAISKKSKERDARIQNMVVFEDLGPEYLEELLGSSQSGSSCSF | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50242121 | 50243039 | + | Sed0020540.1 | Sed02g1404 | 705072 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1404 | 219 | PANTHER | DNA-BINDING DOMAIN | 37 | 177 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Sed02g1404 | 219 | SUPERFAMILY | DNA-binding domain | 81 | 141 | IPR016177 | GO:0003677(InterPro) | |
Sed02g1404 | 219 | Gene3D | AP2/ERF domain | 80 | 141 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1404 | 219 | PRINTS | Ethylene responsive element binding protein signature | 105 | 121 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1404 | 219 | PRINTS | Ethylene responsive element binding protein signature | 82 | 93 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1404 | 219 | SMART | rav1_2 | 81 | 145 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1404 | 219 | CDD | AP2 | 82 | 140 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1404 | 219 | ProSiteProfiles | AP2/ERF domain profile. | 81 | 139 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1404 | 219 | FunFam | Ethylene-responsive transcription factor 2 | 80 | 141 | - | - | |
Sed02g1404 | 219 | Pfam | AP2 domain | 81 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1404 | Sed-Chr2:50242121 | Sed12g1030 | Sed-Chr12:6648317 | 5.90E-82 | dispersed | |
Sed02g1403 | Sed-Chr2:50218943 | Sed02g1404 | Sed-Chr2:50242121 | 5.80E-17 | tandem | |
Sed02g1404 | Sed-Chr2:50242121 | Sed07g0140 | Sed-Chr7:1299211 | 5.60E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37641 | PF00847 | AP2 | 2.00E-14 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1404 | K14516 | - | csv:101210326 | 302.753 |