Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1404 ATGGATTACTCTGTATTCTTCTCCCAGTATTCGGATATCTCTACCGAATCGTCGTTCGGTTCGCCGGAATCGTCGTTCATGAATTCAGACCAAAATTTCCTTCCTTTCAATGAGAATGATTCGGAAGAAATGCTTTTGTATGGGCTGATCTCAGAGGGGACTCTCGGGGGTAGCGGGCCGGTGCGAGTCAAGGAAGAGGAGGTCGATTCGGTCCGCGAAGCCAGCCCGAAAAGGGAGAAGGCTTACAGAGGAGTTCGCCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTAGAGACTCCACCAGACATGGCATTAGGGTCTGGTTGGGGACTTTCGACAGCGCCGAAGCTGCTGCTTTAGCATACGATCAAGCCGCTTTTTCGATGCGCGGAGCCGCCGCGATCCTCAATTTTCCCGTTGAGAGAGTTAGGGAGTCCCTCAAGGAGATGAACTCCGGCGGCGATGGTTTCGCCGACGACGGCGGGTCTCCGGTGATTGCGTTGAAAAGGAAACACTCCATCAAAAGGAAAGCCATTAGTAAAAAGAGCAAAGAAAGAGATGCGAGGATTCAAAATATGGTGGTTTTTGAGGATTTAGGACCAGAGTATTTGGAAGAGCTTTTGGGATCTTCTCAAAGTGGTAGTTCTTGTTCTTTCTAA 660 50.91 MDYSVFFSQYSDISTESSFGSPESSFMNSDQNFLPFNENDSEEMLLYGLISEGTLGGSGPVRVKEEEVDSVREASPKREKAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVERVRESLKEMNSGGDGFADDGGSPVIALKRKHSIKRKAISKKSKERDARIQNMVVFEDLGPEYLEELLGSSQSGSSCSF 219
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 50242121 50243039 + Sed0020540.1 Sed02g1404 705072
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1404 219 PANTHER DNA-BINDING DOMAIN 37 177 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed02g1404 219 SUPERFAMILY DNA-binding domain 81 141 IPR016177 GO:0003677(InterPro)
Sed02g1404 219 Gene3D AP2/ERF domain 80 141 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1404 219 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1404 219 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1404 219 SMART rav1_2 81 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1404 219 CDD AP2 82 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1404 219 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1404 219 FunFam Ethylene-responsive transcription factor 2 80 141 - -
Sed02g1404 219 Pfam AP2 domain 81 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1404 Sed-Chr2:50242121 Sed12g1030 Sed-Chr12:6648317 5.90E-82 dispersed
Sed02g1403 Sed-Chr2:50218943 Sed02g1404 Sed-Chr2:50242121 5.80E-17 tandem
Sed02g1404 Sed-Chr2:50242121 Sed07g0140 Sed-Chr7:1299211 5.60E-16 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37641 PF00847 AP2 2.00E-14 CL0081 Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1404 K14516 - csv:101210326 302.753