Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1407 ATGTCTCAAGAATTGGGAGTGCTAAATGCACTCGATGTGGCGAAGATGCAATGGTACCATTTCACAGCCATCATCATAGCCGGAATGGGGTTCTTCACGGACGCGTACGATCTCTTCTGCATCGCGGTGGTCTCGAAGCTGCTCGGCCGCATATACTACTACACGCCGGGATCCGACCGGCCCGGCTCGCTTCCTCCAAACGTGTCGGCGGCCGTGAGCGGAGTTGCGCTGTGTGGAACGCTGGCGGGGCAGCTGTTTTTCGGGTGGCTCGGGGACAAGATGGGGAGGAAGAGAGTGTATGGTATAACGTTGATTCTTATGGTGGTATGTTCGTTTGGGTCGGGGCTTAGTTTTGGGCACTCGGCCAAAGCAACAATGACAACTTTGTGTCTATTTCGGTTCTGGCTTGGGTTTGGAATTGGCGGCGATTATCCACTTTCAGCCACAATTATGTCGGAATATGCTAACAAGAAAACTCGTGGGGCTTTTATTGCTGCGGTCTTTGCCATGCAAGGGTTTGGAATTTTGGCTGGTGGGATTGTCGCTTTGATTGTTTCAGCTGCATTCAACAATAGGTTTTCAGCTCCAGCATATGAGATTGATCATGTAGGCTCGACCGTTCCCGAAGCCGACTTTGTATGGCGTGTAGTTCTAATGTTCGGTGCAATCCCAGCCGGTATGACATACTATTGGCGCATGAAAATGCCCGAAACGGCGCGGTACACAGCTCTCGTGGCCAAGAACGCCAAACAAGCTGCCGCGGATATGTCCAAGGTTCTCCAAGTCGAGCTCGAGGCCGAGCAAGAGAAGCTCGACAAAATCGTGGCCACGGACAAGCACAACTTCGGGTTGTTTTCGAGACAATTCCTCAAGAGACACGGCCTCCACTTGCTCGGAACCACGACCACGTGGTTCTTACTCGACATTGCATTTTACAGCCAAAACCTCTTCCAAAAAGACATCTTTACCGCCATTGGGTGGCTACCACCCGCCAAAACCATGAGCGCTTTGGAAGAGTGTTATAGAATCGCAAAGGCTCAAACCCTCATAGCACTTTGTGGGACCGTGCCTGGCTATTGGTTCACCGTGTTTCTTATTGACATCATTGGAAGATTCACAATCCAATTGATTGGGTTCATAATGATGACCATTTTCATGTTTGCCCTTGCCTTTCCTTACAATCATTGGATTTTAAAAGAGAATCGAATTGGGTTTTTGGTCATGTATTCCTTGACCTTTTTCTTCGCCAATTTTGGCCCTAATTCCACCACTTTTATTGTTCCCGCCGAGATCTTCCCCGCTCGGCTTAGATCCACGTGTCATGGGATCTCCGCTGCCGCTGGTAAGGCCGGGGCAATCATTGGGGCGTTCGGGTTTTTGTATGCAGCACAGAAACCGGACAACCCCGACCCTGGTTACCCCGGAGGTATTGGTGTGAAGAACTCTCTCATTGCGCTTGGTTGCATCAACTTCCTCGGTGCTTTGTTGACGTTGCTTGTGCCAGAACCCAAAGGAAAGTCACTCGAAGAGTTGTCCGGGGAGAACGAGGAAATGGAAGACCGTGCCCCTACCGCCCCGTCGAATAGAACAGTACAAGTGTGA 1602 50.62 MSQELGVLNALDVAKMQWYHFTAIIIAGMGFFTDAYDLFCIAVVSKLLGRIYYYTPGSDRPGSLPPNVSAAVSGVALCGTLAGQLFFGWLGDKMGRKRVYGITLILMVVCSFGSGLSFGHSAKATMTTLCLFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAAFNNRFSAPAYEIDHVGSTVPEADFVWRVVLMFGAIPAGMTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKLDKIVATDKHNFGLFSRQFLKRHGLHLLGTTTTWFLLDIAFYSQNLFQKDIFTAIGWLPPAKTMSALEECYRIAKAQTLIALCGTVPGYWFTVFLIDIIGRFTIQLIGFIMMTIFMFALAFPYNHWILKENRIGFLVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGAFGFLYAAQKPDNPDPGYPGGIGVKNSLIALGCINFLGALLTLLVPEPKGKSLEELSGENEEMEDRAPTAPSNRTVQV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50261134 50264214 + Sed0008775.1 Sed02g1407 705075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1407 533 Gene3D MFS general substrate transporter like domains 19 265 IPR036259 -
Sed02g1407 533 Gene3D MFS general substrate transporter like domains 272 528 IPR036259 -
Sed02g1407 533 CDD MFS_PhT 24 504 - -
Sed02g1407 533 NCBIfam phosphate:H+ symporter 8 514 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Sed02g1407 533 SUPERFAMILY MFS general substrate transporter 11 512 IPR036259 -
Sed02g1407 533 FunFam Inorganic phosphate transporter 1-6 19 525 - -
Sed02g1407 533 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 505 IPR020846 GO:0022857(InterPro)
Sed02g1407 533 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 8 510 - -
Sed02g1407 533 MobiDBLite consensus disorder prediction 507 533 - -
Sed02g1407 533 Pfam Sugar (and other) transporter 25 511 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed02g1407 533 MobiDBLite consensus disorder prediction 507 523 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1407 Sed-Chr2:50261134 Sed13g0089 Sed-Chr13:566724 7.60E-184 dispersed
Sed12g1032 Sed-Chr12:6680763 Sed02g1407 Sed-Chr2:50261134 9.50E-232 wgd
Sed02g1407 Sed-Chr2:50261134 Sed04g1985 Sed-Chr4:34407701 7.70E-253 wgd
Sed02g1407 Sed-Chr2:50261134 Sed05g0108 Sed-Chr5:655102 1.10E-230 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1407 K08176 - csv:101213007 937.947