Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1422 ATGGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGGTAGGCTGTGTAAAGCGCTTTTGCATTTAGTAGCCATGTGTGTGGCGGGTGGTGCCCTTCCCATTGTTGCGGCTGCCGCAACTAATTCATTTAATCATTTCGATGGGAAACAGCTTGCTTCCACTTTGGTAGGTAAGAATTGGCTCAGGATTCAAGGTCTCCAGTTCAAATCCATTTTGTCACTGTTTGTGTTTTTCTTGATATTTTCCCCCATTTCATTGTTCTTCACATGTTATGGGTTTCTTTCCCGCTTAATATTTATTTGTTTGCCAGTTGACTCTTCTCAACTTCTAAACTATTCATTTTTCCAATTGGTTGAACACTTCTTGTTCTCTATTTTCAACTGGTTGGTTGTCCAAAGAATTGTGCATATGAGAGCAAAAGCTTGGATTAACGAGAAAAGTTTTAGCCTCAAGAGTAGATTTAGAAAAATGATAAATTGTATTCGTTCAGGGGATCAATTAAGGGTAGATGAAATGATGCATTCTTCAGATTCTTTGGCAACTCGGGACTATTCAGCCGGTGGTTTTTCATCACGAACCGGGGACGTGGAAACAAAGGTGGATAATGACAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATCTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTCGAGTACCAAAAGGGTAACATAGAAGCTGCTCTTCATGTTTTTGAAGGAATAGATATTGCAGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGAGATATGAACAAAATAGGCGCCAATCACAAAGTGATGTTGTGCCTACAATGTCTATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTTTGAAAGCAAAATCATTACAGGGATTAGGAAGGTTTGTAGAGGCAGCCAAATCATGCAAACTAATTTTAGACACTGTTGAGTCTGCATTTCCAGAAGGCTTGCCTGAAAACTTCGCCATTGATTGTAAGTTGCAAGAGACATTAACAAGGGCTGTTGAATTGCTTCCAGAATTGTGGAAATCTGCCAGTTCTCCACAAGAATCTATCTTGTCATATAGGCGTGCCCTTCTCTATCAATGGAATCTTGAAATGAAAATCCGAGCAAAAATAGAAAAGGAGTTTGCAGTATTCCTTCTCTATAGTGGTTGTGATGCAAATCCTCCCAATCTCCGTTCACAGATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGATGAGAAAATATATACTTGGATTGATCGTATGGGATCCATCTACAATTGAGCATCTCTCGTTTGCACTGTCTATTTCAGGCGAATTCGGAGCTCTAGCTAATGAGGTTGAACAATTGCCTCCAGGAATTATAGGAAGAAAAGAAAAGTACTGCACCCTAGCTCTTTGTTACCATGGGGAAGGTAAAAGCTTAGTTGCGTTGAATCTGTTGAAGAACTTCTTAAGTAATATAGAGAACGTAGACTGCTTACTGGAATTGTTGTTGGCTTCAAAGCTGTGTGGAGAAAATCTGGTTTGTCTCGACGAGGGAGTGACGTACACGTCGAGAGCGCTTTTGGAACTGCACGGTAAATGCACCCAGATGACTTCTGTTGCTAATTGCTTACTTGGTGTGCTATTGTCAGCTATATCCAAATCAGTTGTTTCGGATTCACAGAAAACTTTGAAGCAATCCGAAGCACTCAAGGCACTACAAACTGCTGAGCAACTGATGAGACAAAGAGATCCATTCATTGTTTATCACCTTTGTCTTGAATATGCTGAACAGAGGAAGATGGATACTGCTCTTTACTATGCAAAACAGCTAGTGAAACTCGAGGCTGGCTCTAGTCTGAAGTCTTACATCCTCTTGGCGAGAATATTGTCAGCACAGAAACGGTTTGTCGATGCAGAGACTGTACTCAATGCCGCTCTCGAGCAGACTGGGAAATGGGAACAGGGAAAACTCTTACGAACTAAAGCTAAGCTTCAGATTGCACAGGGCCAGTTAAAGAGCAGTATAGAAACGTATACTCATGTCCTTGCTATAATTCAAGTCCGGACAAAAAGTGGTGGGGTTGGAAAGATGCTTTCAAAGGATGTGAGAGCATCTGACAGAAGTCTGGAAATAGATACATGGAACGACCTGGCCAATATTTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATCTGTCTATCAAAATTGGAGGCAATCAATCCGTATTCTGCTTCCAAATGGCATTCCAAAGGTTTACTGTACGAGTCGAAGGGTGTCCCACGAGATGCGTTGCAAGCATACAACAAAGCATTAGAGATTGATCCTGGCCATGTACCCAGCTTGATATCAACTGCCTGTCTTCTCCAACAGCTAGGGGGCAGTCAGTCATATCCTGTTGTAAGAAGCTTGCTAACCGACGCCCTTCGACTTGATCGAGCAAATCCATCTGCATGGTACAATCTCGGGCTGCTTTATAAAGCTGATGGCGGGGCGTCAGCACTGGAGGTTGCCGAATGCTTTGAGGCTGCAACTCTGCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGATGA 2604 42.24 MAEAEAEAEAEGRLCKALLHLVAMCVAGGALPIVAAAATNSFNHFDGKQLASTLVGKNWLRIQGLQFKSILSLFVFFLIFSPISLFFTCYGFLSRLIFICLPVDSSQLLNYSFFQLVEHFLFSIFNWLVVQRIVHMRAKAWINEKSFSLKSRFRKMINCIRSGDQLRVDEMMHSSDSLATRDYSAGGFSSRTGDVETKVDNDNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESAFPEGLPENFAIDCKLQETLTRAVELLPELWKSASSPQESILSYRRALLYQWNLEMKIRAKIEKEFAVFLLYSGCDANPPNLRSQMESSFVPRNNMEEAILLLMDLMRKYILGLIVWDPSTIEHLSFALSISGEFGALANEVEQLPPGIIGRKEKYCTLALCYHGEGKSLVALNLLKNFLSNIENVDCLLELLLASKLCGENLVCLDEGVTYTSRALLELHGKCTQMTSVANCLLGVLLSAISKSVVSDSQKTLKQSEALKALQTAEQLMRQRDPFIVYHLCLEYAEQRKMDTALYYAKQLVKLEAGSSLKSYILLARILSAQKRFVDAETVLNAALEQTGKWEQGKLLRTKAKLQIAQGQLKSSIETYTHVLAIIQVRTKSGGVGKMLSKDVRASDRSLEIDTWNDLANIYTSLSQWRDAEICLSKLEAINPYSASKWHSKGLLYESKGVPRDALQAYNKALEIDPGHVPSLISTACLLQQLGGSQSYPVVRSLLTDALRLDRANPSAWYNLGLLYKADGGASALEVAECFEAATLLEESAPVEPFR 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50377458 50384257 + Sed0026953.1 Sed02g1422 705090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1422 867 Gene3D Tetratricopeptide repeat domain 193 700 IPR011990 GO:0005515(InterPro)
Sed02g1422 867 SUPERFAMILY TPR-like 668 840 IPR011990 GO:0005515(InterPro)
Sed02g1422 867 ProSiteProfiles Leucine-rich repeat profile. 488 509 IPR001611 GO:0005515(InterPro)
Sed02g1422 867 Gene3D Tetratricopeptide repeat domain 705 862 IPR011990 GO:0005515(InterPro)
Sed02g1422 867 ProSiteProfiles TPR repeat profile. 755 788 IPR019734 GO:0005515(InterPro)
Sed02g1422 867 SMART tpr_5 629 662 IPR019734 GO:0005515(InterPro)
Sed02g1422 867 SMART tpr_5 665 698 IPR019734 GO:0005515(InterPro)
Sed02g1422 867 SMART tpr_5 721 754 IPR019734 GO:0005515(InterPro)
Sed02g1422 867 SMART tpr_5 287 320 IPR019734 GO:0005515(InterPro)
Sed02g1422 867 SMART tpr_5 755 788 IPR019734 GO:0005515(InterPro)
Sed02g1422 867 SUPERFAMILY TPR-like 592 692 IPR011990 GO:0005515(InterPro)
Sed02g1422 867 Pfam Tetratricopeptide repeat 758 787 IPR019734 GO:0005515(InterPro)
Sed02g1422 867 PANTHER PROTEIN NPG1 149 867 IPR043376 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1422 Sed-Chr2:50377458 Sed05g0135 Sed-Chr5:825336 1.70E-172 dispersed
Sed01g4284 Sed-Chr1:71098985 Sed02g1422 Sed-Chr2:50377458 1.10E-236 wgd
Sed02g1422 Sed-Chr2:50377458 Sed05g0134 Sed-Chr5:825336 4.80E-236 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1422 K21843 - csv:101206105 1281.93