Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1449 ATGGATTCCCAGTCCTGCGCCTCCCATCTCTCCGATCTCTTCGGCCCGAACACCACCAACGCCACCGCCGCCGCCAACTTCATCTGCGATCACCTCGCCACCGTCTCCAGCAACTTCTCCGACGCCAAAACCGCCCTCGACAACACCTTCCTCCTCTTCTCCGCCTACCTCGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGCGGCCTCTTCTACTACCTCTTCGGCTACGCCTTCGCCTTCGGCTCTCCTTCCGACGGCTTCATCGGCCGCCATAACTTCGGCCTCTCCTCCTTCCCTACCTCCGCCGCGGATTACAGCTTCTTCCTCTACCAGTGGTCCTTCGCCATCGCCGCCGCCGGGATTACCAGCGGATCTATCGCAGAGAGGACTCAATTCGTCGCCTATTTGATTTACTCCTCTGTTTTGACCGGATTCGTTTATCCGGTGGTTTCCCACTGGTTCTGGTCGCCTGATGGTTGGGCCGGGGCGATGAAATCGGGAGGCGATTTGTTGTTTGGATCTGGAGTTATCGACTTCGCCGGGTCCGGCGTTGTTCATATGGTTGGGGGAATCGCAGGTCTATGGGGCGCTTTGATCGAAGGGCCGAGAATCGGCCGATTCGACCATTCCGGCAAGCCGGTGGCTCTGCGAGGGCACAGCGCGTCGCTCGTCGTTCTCGGAACGTTTATGCTCTGGTTCGGATGGTATGGTTTCAATCCAGGCTCATTCACGAAGATTCTCGTTCCGTACACCACCGGAAACTTCTACGGCCAGTGGAGCGCCGTCGGACGCACGGCGGTGACCACCACGCTCGCCGGATGCACGGCGGCGCTCACCACGCTCTTCGGGAAGCGTTTTCTCTCCGGTCACTGGAACGTTACCGACGTCTGTAACGGACTGCTTGGCGGCTTCGCCGCCATCACCGCCGGCTGCGCCGTCGTGGAGCCCTGGGCGGCGATCATCTGCGGCTTTGTTGCGGCTTTAGTTTTGATCTCCTGCAACGTCTTAGCGGAGAAGGTGAAGTTCGACGATCCGTTGGAAGCGGCGCAACTCCACGGCGGATGCGGCACATGGGGAGTGATATTCACGGCGCTGTTCGCGACAAAGGAATACGTGGCGGAGGTGTACGGCGGAGCGGGGCGACCGTACGGGCTGTTAATGGGCGGAGGGGGGAGGTTGCTGGCGGCGCATTTGGTACAGATTTTGGTGATTGTGGGATGGGTGAGTGCAACGATGGGGCCATTGTTCTTGATTCTGAGGAAACTGAAACTTCTGAGAATCTCGAGTGAAGATGAAACGGCGGGGATGGATCTGACCCGCCATGGCGGATTCGCTTACAAATATCACGATGAAGACGAAGCTCAGAAAATGGGGATTCAGATGAACGGAGTGGAGCCCAATAGGGGGGATTATTGA 1491 58.95 MDSQSCASHLSDLFGPNTTNATAAANFICDHLATVSSNFSDAKTALDNTFLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSDGFIGRHNFGLSSFPTSAADYSFFLYQWSFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGAMKSGGDLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHSGKPVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCAVVEPWAAIICGFVAALVLISCNVLAEKVKFDDPLEAAQLHGGCGTWGVIFTALFATKEYVAEVYGGAGRPYGLLMGGGGRLLAAHLVQILVIVGWVSATMGPLFLILRKLKLLRISSEDETAGMDLTRHGGFAYKYHDEDEAQKMGIQMNGVEPNRGDY 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50542844 50545599 + Sed0019797.1 Sed02g1449 705117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1449 496 NCBIfam ammonium transporter 47 471 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed02g1449 496 SUPERFAMILY Ammonium transporter 45 452 - -
Sed02g1449 496 FunFam Ammonium transporter 28 486 - -
Sed02g1449 496 PANTHER AMMONIUM TRANSPORTER 22 480 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Sed02g1449 496 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed02g1449 496 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed02g1449 496 Gene3D Ammonium transporter AmtB like domains 26 489 IPR029020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1449 Sed-Chr2:50542844 Sed09g0197 Sed-Chr9:1585433 2.40E-224 dispersed
Sed01g4255 Sed-Chr1:70843129 Sed02g1449 Sed-Chr2:50542844 6.40E-198 wgd
Sed02g1449 Sed-Chr2:50542844 Sed05g0155 Sed-Chr5:939671 5.20E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1449 K03320 - csv:101208366 842.417