Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g1451 | ATGGAGCAAGAAGAATATACAAAAGAAGCAATCAACTGGAGTTATATTGAATTTGTTGATAACCAGGATGTTCTTGATCTCATCGAGAAGAAACCTGGTGGTGTCATTGCTCTTCTAGATGAAGCTTGCATGTTTCCGAGATCCACGCATGAGACTTTTGCGCAGAAACTATATCAAACTTTTAAGGACCATAAACGCTTTAGTAAGCCTAAATTGTCACGAACTGACTTCACAATATGTCATTATGCTGGTGATGTTACATACCAAACTGAACTCTTCTTAGACAAAAACAAAGATTATGTTGTTCCGGAGCATCAAGCACTGTTGAGTGCTTCTAAGTGCTCCTTTGTTTCAGGGCTCTTCCCCCCTTTACGTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATTGGGACTAGCTTTAAGCAACAACTTCAATCTTTACTCGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTTAAACCGTCCATCTTTGAGAATAATAATGTTTTACAGCAGCTCCGATGTGGGGGAGTCATGGAAGCAATCAGGATCAGTTGTGCAGGATATCCCACTAGGAAGACGTTTGCTGAATTTATTAGTCGTTTTACAACCTTAGCACCTGATGTCGTGAAGGGGAGCTCCAATGAAGCTACTGCGTGTGAAAGGCTTTTGAAGAAAGTTAATCTTAAAGGTTATCAGATTGGTAAAACCAAAGTGTTTCTCAGGGCTGGTCAAATGGCAGAATTAGATACTTGCCGAACTGAGGTCTTGGGAGCATCTGCTAGTGTTATCCAAAGGAAAGTTCGTTCATATTTGGCACGCAAAAACTTTCTTTTGTTGCGGTTGGCTGCTGTACAAGTTCAAGCCCTTTGTAGAGGGGAAATTGCACGCCATAAGTATGTAAACATCAGAAGGGAAGCAGCTTCTCTCAAAATTCAGAAGTATTGGCGCATGTATTTTGCTCGAAGTTGCTATAAGAGATTGTGCTCTTCAGCCGTAGCTATTCAAGCTGGTATCCACGGTATGCTTGCTCGTAAAGAGCTTAAGTTCAGGAGGCTGTCAAGAGCTGCAATTATCATTCAGAGTCAATGTCGGAAATACTTGGCCCGTATGCATTATTTGAGAATAAAAAAAGGTGCAATTACCACTCAATGCGCCTGGAGAGGAAGAGTTGCACGCAAAGAACTTCGAAAGCTTAAGATGGCTGCTAAGGAAGCTGGCGCTCTTCGAGCGGCCAAAGATATGCTGGAGAAGCAGGTGGAAGAGCTAATGTCTAAATTAGAGCTAGAAATACAAATGAGGGCTGACATCGAGGAAGCCAAGACCCAAGAAAACAAAAAATTGAAGGCTGATTTGGAAGAATTGGGAACTCAATTTGAGGAAACAAAAGCACTTCTTCTTAAGGAACATGAAGCTACAAAGAAAGAAGTTGTACAAGTTCCAGTCATAGAGGAGGTTCCCGTTGTTGATAATGAGCTGACCAATAAGCTAACTATTGAAAATGAAGAATTACGAAGTCAATTACAAGAAACAAAAACATTGCTTATTGAGGAACGTGAAGCTGCAAAGAAAGTAGTTGAACAAGTCCCAATCATACAAGAAGTTCATGTTGGTGATCATGAGCTGATTAATAAGCTAACTATTGAAAATGAAAAATTGCGAATTCAATTACAGGAAACAAAAGCACTGCTTATTGAGGAAAGTGAAGCTACAAAGAAAGTAGTTGAGCAAGTCTCAATCATACAGGAGGCCCCCGTTGTTGACCATGAGCTAATCAATAAGCTTACTATTGAAAATGAAAAACTTAAGACCAGATTTTCAAATCATATCGAAGGTGAAGTTGCAAAGAAAATAGTTGAGCAAGTCTCAGTCATACAAGAGGTTCCCGTCGTTGAGGAATGTGAAGACGCAAAGAAAGTAGTTGAGCAAGCCCCAGTCATAAAGGAGGTTCCCCTTGTTGATCATGAACTTATCAATAAGCTAACTACTGAAAATGAAGAACTCAAGGCATTGCTTTCAAATCGTACGAGAGGTGAAGCTGCAAAAAAAGAAGTTGAGCAAGTCCCAGTCATACAGGAGGCTCCCGTTGTTGAGGAATGTGAGGTTGCAAAGAAAGTAGTTGAGCAAGTCCCAGTCATCCAAGAGGTTGATGTTGATGATCATGAACTGATCAAGAAATTAACAACTGAAAATAAAGAACTTAAGGCTCTTGTAAGTTCTTTGGAAAATAAATTTGAAGAAAGTAACAGACTTAGTGAAGAGCGGCTGAAGCAGGCTACGGAGGCAGAGTCAAAGATAATAGAATTAAAGACCACCATGCAAAGGCTTGAGGAAAAATTATCTGACTTGGAAACTGAGGACCAAATTATAAGGCAGCAATCACTTCTAAGGCCTCCCTCAAGAAAAATGTCTGGACTTTTAGCAATGCAGCCTGTGGAAAATGGCCACCATGAATTAAGCAATGCGCCATCAAAAAAGTATGGTACTGATGCTGATGCAAAATTGAGGAGATCCCAAATTGAAAGGCAGAACGAAGGCATGGATGCTCTATCAAAATACCTGACAGAAAATCTTGGGTACAGTGATGGAAAACCTGTCGCTGCTTTTGTAATTTATAAATCTTTCCTCCATTGGAAATCATTTGAAGCAGAAAAAACAAGTGTTTTTGATCGACTTATTCAGCTTATTGGTCATGCAATTGAGAATCAGGATGATAATGAACTTATGACTTATTGGTTATCCAACACAACTACATTGTTGTTCCTTCTTCAAAAGAGTTTAAAAGCCACACCACGAAAGCCTCCCACCCCGACATCATTGTTTGAGCGCCTGGGGTTTCGTTCATCTTCTGCAAACCTTCCAGTTGGCACCCTGGATGTAGTGCGGCAAGTTGAGGCCAAATATCCTGCTCTACTTTTCAAGCAACAGCTAACAGCATATGTAGAAAAGATATATGGAATAGTTAGAGACAACCTAAAGAAGGATCTATCGCCGTTGCTTTCAACTTGTATGCAGGCTCCCAAATCTCCTAAAGGAAATATTTCGGAATCATCTGACCAGGAAAATAGTAGTAGCCCTCCCAGTAGTTTATGGAGCAGCGTCGTCGAGAATCTTAATAATCATCTTCGTAGATTGCAGGAGAACTGTGTTCCAACCGTTTTGGTCCAGAAGATATTCACTCAGGTTTTTTCATACATCAACGTACAGCTTTTCAATAGTCTTCTTCTTCATCGAGAGTGCTGCACGTTTAGCAATGGAGAATATTTGAAGTCAGGACTGGATGAGTTAGAGATTTGGTGTTCCCAAGCAAAAGAAGAGTATGCTGGGCCGTCTTGGGATGAGCTAAAACCGGTGAGGCAAGCTGTTGGGTTCTTGGTTATTCACCAGAAATCCAGAATATCTTATGATGAAATTACAACTGACCTCTGTCCAATGTTGAGCGTTCAGCAAATTTATCGAGTATGCACTCTCTATTGCGACGACAATTACAATACTACGAGTGTAGATCAAGAAGTTATATCTAGCATGAAGGCTATGATGAATGATGATTCCAATGATGAAGACAGTAGTTCCTTTTTGTTGGATGACAATTCCAGTATACCTTTCTCAGTTGAAGACATATCCACTTCCTTACAAGACAAGAATTTTCAAGATATAAAGCCTCCAGCAAAACTACTTGAGAATCCAGTCTTCCAATTTTTGCAGGAATAA | 3741 | 40.23 | MEQEEYTKEAINWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVPEHQALLSASKCSFVSGLFPPLREETSKSSKFSSIGTSFKQQLQSLLETLNATEPHYIRCVKPNNLLKPSIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTFAEFISRFTTLAPDVVKGSSNEATACERLLKKVNLKGYQIGKTKVFLRAGQMAELDTCRTEVLGASASVIQRKVRSYLARKNFLLLRLAAVQVQALCRGEIARHKYVNIRREAASLKIQKYWRMYFARSCYKRLCSSAVAIQAGIHGMLARKELKFRRLSRAAIIIQSQCRKYLARMHYLRIKKGAITTQCAWRGRVARKELRKLKMAAKEAGALRAAKDMLEKQVEELMSKLELEIQMRADIEEAKTQENKKLKADLEELGTQFEETKALLLKEHEATKKEVVQVPVIEEVPVVDNELTNKLTIENEELRSQLQETKTLLIEEREAAKKVVEQVPIIQEVHVGDHELINKLTIENEKLRIQLQETKALLIEESEATKKVVEQVSIIQEAPVVDHELINKLTIENEKLKTRFSNHIEGEVAKKIVEQVSVIQEVPVVEECEDAKKVVEQAPVIKEVPLVDHELINKLTTENEELKALLSNRTRGEAAKKEVEQVPVIQEAPVVEECEVAKKVVEQVPVIQEVDVDDHELIKKLTTENKELKALVSSLENKFEESNRLSEERLKQATEAESKIIELKTTMQRLEEKLSDLETEDQIIRQQSLLRPPSRKMSGLLAMQPVENGHHELSNAPSKKYGTDADAKLRRSQIERQNEGMDALSKYLTENLGYSDGKPVAAFVIYKSFLHWKSFEAEKTSVFDRLIQLIGHAIENQDDNELMTYWLSNTTTLLFLLQKSLKATPRKPPTPTSLFERLGFRSSSANLPVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKDLSPLLSTCMQAPKSPKGNISESSDQENSSSPPSSLWSSVVENLNNHLRRLQENCVPTVLVQKIFTQVFSYINVQLFNSLLLHRECCTFSNGEYLKSGLDELEIWCSQAKEEYAGPSWDELKPVRQAVGFLVIHQKSRISYDEITTDLCPMLSVQQIYRVCTLYCDDNYNTTSVDQEVISSMKAMMNDDSNDEDSSSFLLDDNSSIPFSVEDISTSLQDKNFQDIKPPAKLLENPVFQFLQE | 1246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 50564742 | 50577979 | + | Sed0006543.1 | Sed02g1451 | 705119 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g1451 | 1246 | Coils | Coil | 504 | 531 | - | - | |
| Sed02g1451 | 1246 | Gene3D | - | 1 | 155 | - | - | |
| Sed02g1451 | 1246 | ProSiteProfiles | IQ motif profile. | 363 | 392 | - | - | |
| Sed02g1451 | 1246 | FunFam | Myosin XI D | 267 | 316 | - | - | |
| Sed02g1451 | 1246 | FunFam | unconventional myosin-Va | 365 | 413 | - | - | |
| Sed02g1451 | 1246 | CDD | MyosinXI_CBD | 851 | 1215 | IPR037975 | GO:0007015(InterPro) | |
| Sed02g1451 | 1246 | FunFam | unconventional myosin-Va | 317 | 364 | - | - | |
| Sed02g1451 | 1246 | Coils | Coil | 769 | 803 | - | - | |
| Sed02g1451 | 1246 | Coils | Coil | 448 | 475 | - | - | |
| Sed02g1451 | 1246 | ProSiteProfiles | IQ motif profile. | 290 | 319 | - | - | |
| Sed02g1451 | 1246 | SMART | DIL_2 | 1067 | 1174 | IPR002710 | - | |
| Sed02g1451 | 1246 | Gene3D | - | 199 | 265 | - | - | |
| Sed02g1451 | 1246 | PANTHER | MYOSIN | 1 | 362 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed02g1451 | 1246 | Coils | Coil | 553 | 580 | - | - | |
| Sed02g1451 | 1246 | MobiDBLite | consensus disorder prediction | 1015 | 1041 | - | - | |
| Sed02g1451 | 1246 | ProSiteProfiles | IQ motif profile. | 340 | 367 | - | - | |
| Sed02g1451 | 1246 | Pfam | DIL domain | 1067 | 1171 | IPR002710 | - | |
| Sed02g1451 | 1246 | SMART | MYSc_2a | 1 | 265 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed02g1451 | 1246 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 318 | 414 | IPR027417 | - | |
| Sed02g1451 | 1246 | Pfam | IQ calmodulin-binding motif | 293 | 310 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | Pfam | IQ calmodulin-binding motif | 365 | 383 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | Pfam | IQ calmodulin-binding motif | 317 | 336 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | Pfam | IQ calmodulin-binding motif | 388 | 407 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | Pfam | IQ calmodulin-binding motif | 269 | 287 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | SMART | iq_5 | 337 | 359 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | SMART | iq_5 | 266 | 288 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | SMART | iq_5 | 314 | 336 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | SMART | iq_5 | 385 | 407 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | SMART | iq_5 | 289 | 311 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | SMART | iq_5 | 362 | 384 | IPR000048 | GO:0005515(InterPro) | |
| Sed02g1451 | 1246 | Pfam | Myosin head (motor domain) | 2 | 252 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed02g1451 | 1246 | Coils | Coil | 734 | 761 | - | - | |
| Sed02g1451 | 1246 | ProSiteProfiles | IQ motif profile. | 315 | 344 | - | - | |
| Sed02g1451 | 1246 | ProSiteProfiles | IQ motif profile. | 269 | 296 | - | - | |
| Sed02g1451 | 1246 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 318 | IPR027417 | - | |
| Sed02g1451 | 1246 | ProSiteProfiles | Myosin motor domain profile. | 1 | 264 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed02g1451 | 1246 | ProSiteProfiles | IQ motif profile. | 386 | 415 | - | - | |
| Sed02g1451 | 1246 | Gene3D | - | 317 | 363 | - | - | |
| Sed02g1451 | 1246 | Gene3D | - | 364 | 414 | - | - | |
| Sed02g1451 | 1246 | Gene3D | - | 267 | 316 | - | - | |
| Sed02g1451 | 1246 | Gene3D | Kinesin motor domain | 156 | 198 | IPR036961 | - | |
| Sed02g1451 | 1246 | Coils | Coil | 409 | 443 | - | - | |
| Sed02g1451 | 1246 | ProSiteProfiles | Dilute domain profile. | 900 | 1192 | IPR002710 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g1451 | Sed-Chr2:50564742 | Sed12g0429 | Sed-Chr12:2573912 | 0.00E+00 | dispersed | |
| Sed12g0428 | Sed-Chr12:2572455 | Sed02g1451 | Sed-Chr2:50564742 | 0.00E+00 | wgd | |
| Sed02g1451 | Sed-Chr2:50564742 | Sed07g0182 | Sed-Chr7:1561268 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g1451 | K10357 | - | gmx:100791031 | 1260.74 |