Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1457 ATGAGGGAAGTGAAGCTTCATGGAACATGGCCGAGCCCTTTCAGTTACAGAGTGATTTGGGCTCTGGCGCTCAAAAGCATTCCTTATGAATACGTAGAAGAAGATCTCGCCAACAAAAGCCATGTGCTGTTGCAGTATAATCCGGTTCATAAGAAGATTCCGGTGCTCGTCCATGGCGAAAACCCGATCTGCGAGTCCGTGATCATTCTCGAGTATATCGACGAGACGTGGCCGGAGAAGCCGCTCCTGCCGTCCGATCCTCTCCGCAGGGCCACTGCCAGATTCTGGATCAAATTCATTGAGGACAAGGGGCATGCGGTTTTTATGATGTTCCATTCGAGGAACGAGGAAGAGCTAGAGAGTGCGAAGAAGCAGAGCTTGGAGATGCTGAGAACCGTCGAGGAACGGGGATTCGGCGGCGGCGGCGACGGCGGAGATAGAAAGTTCTTCGGCGGCGATGAGATCGGAATGGCGGATTTGGCGTTTGGGTGGATCGCGATCTGGTTGGGAGTGGTTGAGGAGGTGGTGGGCGTCAAATTGCTGGACGGCGGCGAGTTTCCTCGGGTGTATGCTTGGTCGAAAAGATTCAGGGAAGCGCCGGTCATCAGAGATAATCTGCCGGACCGGAATCTCACGGTGGCGGCGTTCCGGCGCCGGAGAGACCAATTGCTTCAATCTGCACTTTATTAG 690 54.35 MREVKLHGTWPSPFSYRVIWALALKSIPYEYVEEDLANKSHVLLQYNPVHKKIPVLVHGENPICESVIILEYIDETWPEKPLLPSDPLRRATARFWIKFIEDKGHAVFMMFHSRNEEELESAKKQSLEMLRTVEERGFGGGGDGGDRKFFGGDEIGMADLAFGWIAIWLGVVEEVVGVKLLDGGEFPRVYAWSKRFREAPVIRDNLPDRNLTVAAFRRRRDQLLQSALY 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50627632 50629636 + Sed0018788.1 Sed02g1457 705125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1457 229 Pfam Glutathione S-transferase, N-terminal domain 4 75 IPR004045 -
Sed02g1457 229 CDD GST_N_Tau 4 77 - -
Sed02g1457 229 Pfam Glutathione S-transferase, C-terminal domain 103 200 IPR004046 -
Sed02g1457 229 CDD GST_C_Tau 87 219 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed02g1457 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 216 IPR010987 -
Sed02g1457 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 3 217 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Sed02g1457 229 SUPERFAMILY Thioredoxin-like 3 102 IPR036249 -
Sed02g1457 229 FunFam Tau class glutathione S-transferase 1 85 - -
Sed02g1457 229 SFLD Main (cytGST) 2 226 - -
Sed02g1457 229 SFLD Main.3: Omega- and Tau-like 2 226 IPR045073 -
Sed02g1457 229 Gene3D - 86 227 - -
Sed02g1457 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Sed02g1457 229 FunFam Tau class glutathione S-transferase 83 226 - -
Sed02g1457 229 Coils Coil 116 136 - -
Sed02g1457 229 Gene3D Glutaredoxin 1 85 - -
Sed02g1457 229 SUPERFAMILY GST C-terminal domain-like 75 221 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1457 K00799 - - csv:101207387 334.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1454 Sed-Chr2:50600853 Sed02g1457 Sed-Chr2:50627632 1.70E-76 dispersed
Sed02g1455 Sed-Chr2:50603352 Sed02g1457 Sed-Chr2:50627632 3.20E-74 dispersed
Sed02g1457 Sed-Chr2:50627632 Sed12g0427 Sed-Chr12:2570650 1.20E-58 dispersed
Sed02g1456 Sed-Chr2:50622780 Sed02g1457 Sed-Chr2:50627632 1.50E-77 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g815 . . . . . . . . . . Cma06g01278 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 . . . . . . . . . . . Lsi05g01791 . . Cme06g00432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01147 Chy06g00411 .
Vvi15g85 . . . . . . . . . . Cma06g01277 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 Cla05g00265 Cam05g0289 Cec05g0289 Cco05g0297 Clacu05g0286 Cmu05g0272 Cre05g0336 . . . . Lsi05g01929 . . Cme06g00291 . . . . . . . . . Cmo06g01186 . . . . . . . . . . . . . . . . . . . . . . Csa03g00999 Chy06g00270 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120