Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1468 | ATGGCAATGGCGGAATCTGGAGATTGGATTCGGTTGTTTCTGCTTGTAGCGTTCATGTTGTTCGTCGAAACAATCGCCAGAGTTCCGAAAGAGATTCATGAAATCAAGAATGGAGCAACTGAGATGTTGCAGAGCTCAAGCAATTCATCAACGGCAGTGAGGCTGGACGAGCAGACTCTCGGTAATAAGCATGCTGTGGATAACCCGGAAGAGATTGCTGCTATGGTTGACATGACTATCCGCAATGCCACTGCAAGGAGGGAGCTTGGTTTCTTCTCTTGTGGAACTGGCAATCCAATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAAAAGAACCGTAAGCGTCTGGCAGATTGTGGCATTGGCTTCGGCCGAAATGCGATTGGTGGTCGCGATGGTCGATTCTACGTCGTCACTGATTCCGGCAACGACAACCCTACCAACCCAAAGCCTGGCACTTTGCGCCATGCTGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCCTCACAATCCAGTTTGTGACAAACGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGCAACGCCATGGTGAGAAGCTCGCCCAATCACGTTGGGTGGAGAACAATGGCGGATGGAGATGCCATTTCCATTTTTGGGTCGAGTCATATCTGGATCGACCACAATTCACTCTCTAACTGTGCCGATGGCCTTGTCGATGCTGTCATGGGATCCACAGCCATTACCGTCTCCAACAATTACTTCACCCACCACAACGAGGTAATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACTAATGCAAGTGACCATTGCTTACAATCATTTTGGTGAAGGACTCATCCAAAGAATGCCAAGATGTAGACACGGATACTTTCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACTAACCCTTTCGCAAAAGAGGTAACCAAGAGGGTTGAGACAGCTGAGTCCCAGTGGAAAAACTGGAATTGGAGATCTGAGGGAGACCTGTTGATGAATGGTGCATTTTTCATTCCATCTGGTAAAGGGGCCTCAGCAAGCTATGCCAGAGCCTCAAGTTTGGGAGCTAAATCCTCATCAATGGTTTCGTCCATAACATCCAACGCCGGTGCACTTGACTGCCGAAGAGGCCATCCCTGCTAG | 1341 | 47.73 | MAMAESGDWIRLFLLVAFMLFVETIARVPKEIHEIKNGATEMLQSSSNSSTAVRLDEQTLGNKHAVDNPEEIAAMVDMTIRNATARRELGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGNDNPTNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKNWNWRSEGDLLMNGAFFIPSGKGASASYARASSLGAKSSSMVSSITSNAGALDCRRGHPC | 446 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50689600 | 50695241 | - | Sed0020002.1 | Sed02g1468 | 705136 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1468 | 446 | PANTHER | PECTATE LYASE 18-RELATED | 22 | 443 | IPR045032 | GO:0030570(InterPro) | |
Sed02g1468 | 446 | FunFam | Pectate lyase | 97 | 439 | - | - | |
Sed02g1468 | 446 | Gene3D | - | 97 | 439 | IPR012334 | - | |
Sed02g1468 | 446 | SUPERFAMILY | Pectin lyase-like | 74 | 440 | IPR011050 | - | |
Sed02g1468 | 446 | SMART | amb_all | 172 | 369 | IPR002022 | - | |
Sed02g1468 | 446 | PRINTS | Pollen allergen Amb family signature | 180 | 196 | IPR018082 | - | |
Sed02g1468 | 446 | PRINTS | Pollen allergen Amb family signature | 120 | 137 | IPR018082 | - | |
Sed02g1468 | 446 | PRINTS | Pollen allergen Amb family signature | 346 | 365 | IPR018082 | - | |
Sed02g1468 | 446 | PRINTS | Pollen allergen Amb family signature | 388 | 412 | IPR018082 | - | |
Sed02g1468 | 446 | PRINTS | Pollen allergen Amb family signature | 144 | 169 | IPR018082 | - | |
Sed02g1468 | 446 | PRINTS | Pollen allergen Amb family signature | 244 | 265 | IPR018082 | - | |
Sed02g1468 | 446 | PRINTS | Pollen allergen Amb family signature | 417 | 440 | IPR018082 | - | |
Sed02g1468 | 446 | PRINTS | Pollen allergen Amb family signature | 324 | 343 | IPR018082 | - | |
Sed02g1468 | 446 | Pfam | Pectate lyase | 183 | 361 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1468 | Sed-Chr2:50689600 | Sed02g1470 | Sed-Chr2:50689600 | 2.20E-237 | dispersed | |
Sed02g1468 | Sed-Chr2:50689600 | Sed02g1469 | Sed-Chr2:50689600 | 4.50E-238 | tandem | |
Sed04g0011 | Sed-Chr4:77612 | Sed02g1468 | Sed-Chr2:50689600 | 4.60E-173 | transposed | |
Sed11g1880 | Sed-Chr11:33382568 | Sed02g1468 | Sed-Chr2:50689600 | 1.50E-168 | transposed | |
Sed01g4237 | Sed-Chr1:70681923 | Sed02g1468 | Sed-Chr2:50689600 | 5.70E-198 | wgd | |
Sed12g0409 | Sed-Chr12:2470045 | Sed02g1468 | Sed-Chr2:50689600 | 1.10E-231 | wgd | |
Sed02g1468 | Sed-Chr2:50689600 | Sed04g2044 | Sed-Chr4:34840872 | 1.10E-215 | wgd | |
Sed02g1468 | Sed-Chr2:50689600 | Sed05g0178 | Sed-Chr5:1087714 | 4.90E-192 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1468 | K01728 | - | csv:101218188 | 863.603 |