Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1468 ATGGCAATGGCGGAATCTGGAGATTGGATTCGGTTGTTTCTGCTTGTAGCGTTCATGTTGTTCGTCGAAACAATCGCCAGAGTTCCGAAAGAGATTCATGAAATCAAGAATGGAGCAACTGAGATGTTGCAGAGCTCAAGCAATTCATCAACGGCAGTGAGGCTGGACGAGCAGACTCTCGGTAATAAGCATGCTGTGGATAACCCGGAAGAGATTGCTGCTATGGTTGACATGACTATCCGCAATGCCACTGCAAGGAGGGAGCTTGGTTTCTTCTCTTGTGGAACTGGCAATCCAATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAAAAGAACCGTAAGCGTCTGGCAGATTGTGGCATTGGCTTCGGCCGAAATGCGATTGGTGGTCGCGATGGTCGATTCTACGTCGTCACTGATTCCGGCAACGACAACCCTACCAACCCAAAGCCTGGCACTTTGCGCCATGCTGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCCTCACAATCCAGTTTGTGACAAACGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGCAACGCCATGGTGAGAAGCTCGCCCAATCACGTTGGGTGGAGAACAATGGCGGATGGAGATGCCATTTCCATTTTTGGGTCGAGTCATATCTGGATCGACCACAATTCACTCTCTAACTGTGCCGATGGCCTTGTCGATGCTGTCATGGGATCCACAGCCATTACCGTCTCCAACAATTACTTCACCCACCACAACGAGGTAATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACTAATGCAAGTGACCATTGCTTACAATCATTTTGGTGAAGGACTCATCCAAAGAATGCCAAGATGTAGACACGGATACTTTCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACTAACCCTTTCGCAAAAGAGGTAACCAAGAGGGTTGAGACAGCTGAGTCCCAGTGGAAAAACTGGAATTGGAGATCTGAGGGAGACCTGTTGATGAATGGTGCATTTTTCATTCCATCTGGTAAAGGGGCCTCAGCAAGCTATGCCAGAGCCTCAAGTTTGGGAGCTAAATCCTCATCAATGGTTTCGTCCATAACATCCAACGCCGGTGCACTTGACTGCCGAAGAGGCCATCCCTGCTAG 1341 47.73 MAMAESGDWIRLFLLVAFMLFVETIARVPKEIHEIKNGATEMLQSSSNSSTAVRLDEQTLGNKHAVDNPEEIAAMVDMTIRNATARRELGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGNDNPTNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKNWNWRSEGDLLMNGAFFIPSGKGASASYARASSLGAKSSSMVSSITSNAGALDCRRGHPC 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50689600 50695241 - Sed0020002.1 Sed02g1468 705136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1468 446 PANTHER PECTATE LYASE 18-RELATED 22 443 IPR045032 GO:0030570(InterPro)
Sed02g1468 446 FunFam Pectate lyase 97 439 - -
Sed02g1468 446 Gene3D - 97 439 IPR012334 -
Sed02g1468 446 SUPERFAMILY Pectin lyase-like 74 440 IPR011050 -
Sed02g1468 446 SMART amb_all 172 369 IPR002022 -
Sed02g1468 446 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Sed02g1468 446 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Sed02g1468 446 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Sed02g1468 446 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Sed02g1468 446 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Sed02g1468 446 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Sed02g1468 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Sed02g1468 446 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Sed02g1468 446 Pfam Pectate lyase 183 361 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1468 Sed-Chr2:50689600 Sed02g1470 Sed-Chr2:50689600 2.20E-237 dispersed
Sed02g1468 Sed-Chr2:50689600 Sed02g1469 Sed-Chr2:50689600 4.50E-238 tandem
Sed04g0011 Sed-Chr4:77612 Sed02g1468 Sed-Chr2:50689600 4.60E-173 transposed
Sed11g1880 Sed-Chr11:33382568 Sed02g1468 Sed-Chr2:50689600 1.50E-168 transposed
Sed01g4237 Sed-Chr1:70681923 Sed02g1468 Sed-Chr2:50689600 5.70E-198 wgd
Sed12g0409 Sed-Chr12:2470045 Sed02g1468 Sed-Chr2:50689600 1.10E-231 wgd
Sed02g1468 Sed-Chr2:50689600 Sed04g2044 Sed-Chr4:34840872 1.10E-215 wgd
Sed02g1468 Sed-Chr2:50689600 Sed05g0178 Sed-Chr5:1087714 4.90E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1468 K01728 - csv:101218188 863.603