Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1469 ATGAAAATGAGAATGAATATTTGCAGAATCATTCTCCGGCTGGACGAGCAGACTCTCGGTAATAAGCATGCTGTGGATAACCCGGAAGAGATTGCTGCTATGGTTGACATGACTATCCGCAATGCCACTGCAAGGAGGGAGCTTGGTTTCTTCTCTTGTGGAACTGGCAATCCAATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAAAAGAACCGTAAGCGTCTGGCAGATTGTGGCATTGGCTTCGGCCGAAATGCGATTGGTGGTCGCGATGGTCGATTCTACGTCGTCACTGATTCCGGCAACGACAACCCTACCAACCCAAAGCCTGGCACTTTGCGCCATGCTGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCCTCACAATCCAGTTTGTGACAAACGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGCAACGCCATGGTGAGAAGCTCGCCCAATCACGTTGGGTGGAGAACAATGGCGGATGGAGATGCCATTTCCATTTTTGGGTCGAGTCATATCTGGATCGACCACAATTCACTCTCTAACTGTGCCGATGGCCTTGTCGATGCTGTCATGGGATCCACAGCCATTACCGTCTCCAACAATTACTTCACCCACCACAACGAGGTAATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACTAATGCAAGTGACCATTGCTTACAATCATTTTGGTGAAGGACTCATCCAAAGAATGCCAAGATGTAGACACGGATACTTTCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACTAACCCTTTCGCAAAAGAGGTAACCAAGAGGGTTGAGACAGCTGAGTCCCAGTGGAAAAACTGGAATTGGAGATCTGAGGGAGACCTGTTGATGAATGGTGCATTTTTCATTCCATCTGGTAAAGGGGCCTCAGCAAGCTATGCCAGAGCCTCAAGTTTGGGAGCTAAATCCTCATCAATGGTTTCGTCCATAACATCCAACGCCGGTGCACTTGACTGCCGAAGAGGCCATCCCTGCTAG 1218 47.54 MKMRMNICRIILRLDEQTLGNKHAVDNPEEIAAMVDMTIRNATARRELGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGNDNPTNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKNWNWRSEGDLLMNGAFFIPSGKGASASYARASSLGAKSSSMVSSITSNAGALDCRRGHPC 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50689600 50695241 - Sed0020002.2 Sed02g1469 705137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1469 405 PANTHER PECTATE LYASE 18-RELATED 23 402 IPR045032 GO:0030570(InterPro)
Sed02g1469 405 Pfam Pectate lyase 142 320 IPR002022 -
Sed02g1469 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Sed02g1469 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Sed02g1469 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Sed02g1469 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Sed02g1469 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Sed02g1469 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Sed02g1469 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Sed02g1469 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Sed02g1469 405 FunFam Pectate lyase 56 398 - -
Sed02g1469 405 Gene3D - 56 398 IPR012334 -
Sed02g1469 405 SUPERFAMILY Pectin lyase-like 33 399 IPR011050 -
Sed02g1469 405 SMART amb_all 131 328 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1469 Sed-Chr2:50689600 Sed12g0409 Sed-Chr12:2470045 2.30E-209 dispersed
Sed02g1468 Sed-Chr2:50689600 Sed02g1469 Sed-Chr2:50689600 4.50E-238 tandem
Sed02g1469 Sed-Chr2:50689600 Sed02g1470 Sed-Chr2:50689600 1.50E-237 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1469 K01728 - csv:101218188 789.645