Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1469 | ATGAAAATGAGAATGAATATTTGCAGAATCATTCTCCGGCTGGACGAGCAGACTCTCGGTAATAAGCATGCTGTGGATAACCCGGAAGAGATTGCTGCTATGGTTGACATGACTATCCGCAATGCCACTGCAAGGAGGGAGCTTGGTTTCTTCTCTTGTGGAACTGGCAATCCAATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAAAAGAACCGTAAGCGTCTGGCAGATTGTGGCATTGGCTTCGGCCGAAATGCGATTGGTGGTCGCGATGGTCGATTCTACGTCGTCACTGATTCCGGCAACGACAACCCTACCAACCCAAAGCCTGGCACTTTGCGCCATGCTGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCCTCACAATCCAGTTTGTGACAAACGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGCAACGCCATGGTGAGAAGCTCGCCCAATCACGTTGGGTGGAGAACAATGGCGGATGGAGATGCCATTTCCATTTTTGGGTCGAGTCATATCTGGATCGACCACAATTCACTCTCTAACTGTGCCGATGGCCTTGTCGATGCTGTCATGGGATCCACAGCCATTACCGTCTCCAACAATTACTTCACCCACCACAACGAGGTAATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACTAATGCAAGTGACCATTGCTTACAATCATTTTGGTGAAGGACTCATCCAAAGAATGCCAAGATGTAGACACGGATACTTTCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACTAACCCTTTCGCAAAAGAGGTAACCAAGAGGGTTGAGACAGCTGAGTCCCAGTGGAAAAACTGGAATTGGAGATCTGAGGGAGACCTGTTGATGAATGGTGCATTTTTCATTCCATCTGGTAAAGGGGCCTCAGCAAGCTATGCCAGAGCCTCAAGTTTGGGAGCTAAATCCTCATCAATGGTTTCGTCCATAACATCCAACGCCGGTGCACTTGACTGCCGAAGAGGCCATCCCTGCTAG | 1218 | 47.54 | MKMRMNICRIILRLDEQTLGNKHAVDNPEEIAAMVDMTIRNATARRELGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGNDNPTNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKNWNWRSEGDLLMNGAFFIPSGKGASASYARASSLGAKSSSMVSSITSNAGALDCRRGHPC | 405 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50689600 | 50695241 | - | Sed0020002.2 | Sed02g1469 | 705137 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1469 | 405 | PANTHER | PECTATE LYASE 18-RELATED | 23 | 402 | IPR045032 | GO:0030570(InterPro) | |
Sed02g1469 | 405 | Pfam | Pectate lyase | 142 | 320 | IPR002022 | - | |
Sed02g1469 | 405 | PRINTS | Pollen allergen Amb family signature | 376 | 399 | IPR018082 | - | |
Sed02g1469 | 405 | PRINTS | Pollen allergen Amb family signature | 347 | 371 | IPR018082 | - | |
Sed02g1469 | 405 | PRINTS | Pollen allergen Amb family signature | 203 | 224 | IPR018082 | - | |
Sed02g1469 | 405 | PRINTS | Pollen allergen Amb family signature | 79 | 96 | IPR018082 | - | |
Sed02g1469 | 405 | PRINTS | Pollen allergen Amb family signature | 139 | 155 | IPR018082 | - | |
Sed02g1469 | 405 | PRINTS | Pollen allergen Amb family signature | 305 | 324 | IPR018082 | - | |
Sed02g1469 | 405 | PRINTS | Pollen allergen Amb family signature | 103 | 128 | IPR018082 | - | |
Sed02g1469 | 405 | PRINTS | Pollen allergen Amb family signature | 283 | 302 | IPR018082 | - | |
Sed02g1469 | 405 | FunFam | Pectate lyase | 56 | 398 | - | - | |
Sed02g1469 | 405 | Gene3D | - | 56 | 398 | IPR012334 | - | |
Sed02g1469 | 405 | SUPERFAMILY | Pectin lyase-like | 33 | 399 | IPR011050 | - | |
Sed02g1469 | 405 | SMART | amb_all | 131 | 328 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1469 | Sed-Chr2:50689600 | Sed12g0409 | Sed-Chr12:2470045 | 2.30E-209 | dispersed | |
Sed02g1468 | Sed-Chr2:50689600 | Sed02g1469 | Sed-Chr2:50689600 | 4.50E-238 | tandem | |
Sed02g1469 | Sed-Chr2:50689600 | Sed02g1470 | Sed-Chr2:50689600 | 1.50E-237 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1469 | K01728 | - | csv:101218188 | 789.645 |