Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1470 ATGTGCCTCTGTCTCGGTCACAATGCATTATTGTCCCTGCCAAAAAATCGATATCGTGCCCATCAACTGCTGGACGAGCAGACTCTCGGTAATAAGCATGCTGTGGATAACCCGGAAGAGATTGCTGCTATGGTTGACATGACTATCCGCAATGCCACTGCAAGGAGGGAGCTTGGTTTCTTCTCTTGTGGAACTGGCAATCCAATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAAAAGAACCGTAAGCGTCTGGCAGATTGTGGCATTGGCTTCGGCCGAAATGCGATTGGTGGTCGCGATGGTCGATTCTACGTCGTCACTGATTCCGGCAACGACAACCCTACCAACCCAAAGCCTGGCACTTTGCGCCATGCTGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAATAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCCTCACAATCCAGTTTGTGACAAACGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGCAACGCCATGGTGAGAAGCTCGCCCAATCACGTTGGGTGGAGAACAATGGCGGATGGAGATGCCATTTCCATTTTTGGGTCGAGTCATATCTGGATCGACCACAATTCACTCTCTAACTGTGCCGATGGCCTTGTCGATGCTGTCATGGGATCCACAGCCATTACCGTCTCCAACAATTACTTCACCCACCACAACGAGGTAATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACTAATGCAAGTGACCATTGCTTACAATCATTTTGGTGAAGGACTCATCCAAAGAATGCCAAGATGTAGACACGGATACTTTCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACTAACCCTTTCGCAAAAGAGGTAACCAAGAGGGTTGAGACAGCTGAGTCCCAGTGGAAAAACTGGAATTGGAGATCTGAGGGAGACCTGTTGATGAATGGTGCATTTTTCATTCCATCTGGTAAAGGGGCCTCAGCAAGCTATGCCAGAGCCTCAAGTTTGGGAGCTAAATCCTCATCAATGGTTTCGTCCATAACATCCAACGCCGGTGCACTTGACTGCCGAAGAGGCCATCCCTGCTAG 1248 47.92 MCLCLGHNALLSLPKNRYRAHQLLDEQTLGNKHAVDNPEEIAAMVDMTIRNATARRELGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGNDNPTNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKNWNWRSEGDLLMNGAFFIPSGKGASASYARASSLGAKSSSMVSSITSNAGALDCRRGHPC 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50689600 50695241 - Sed0020002.3 Sed02g1470 705138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1470 415 FunFam Pectate lyase 66 408 - -
Sed02g1470 415 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Sed02g1470 415 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Sed02g1470 415 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Sed02g1470 415 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Sed02g1470 415 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Sed02g1470 415 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Sed02g1470 415 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Sed02g1470 415 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Sed02g1470 415 SMART amb_all 141 338 IPR002022 -
Sed02g1470 415 Gene3D - 66 408 IPR012334 -
Sed02g1470 415 Pfam Pectate lyase 152 330 IPR002022 -
Sed02g1470 415 PANTHER PECTATE LYASE 18-RELATED 33 412 IPR045032 GO:0030570(InterPro)
Sed02g1470 415 SUPERFAMILY Pectin lyase-like 43 409 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1468 Sed-Chr2:50689600 Sed02g1470 Sed-Chr2:50689600 2.20E-237 dispersed
Sed02g1470 Sed-Chr2:50689600 Sed12g0409 Sed-Chr12:2470045 1.10E-209 dispersed
Sed02g1469 Sed-Chr2:50689600 Sed02g1470 Sed-Chr2:50689600 1.50E-237 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1470 K01728 - csv:101218188 788.875