Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1472 ATGGCTAGGGAAGTATATGGCACTTTAAACAAACAATTATACATGGAACGACGGAGGGCTATTTCGAATGTCCGAATTACTGCAGATCATGGTGCGAATGATGTTTGTTCTCAGACGGGTGAAGTATTTTCTCCTCAGTTTATGCGGGATCGAACTGGTTTGAGAAGATTTTCGGATGAAGATCAACTACAGCAGCAGAAAAAGGTATCAGCTATTGGTTTCAATCCGAGCAACCAACTGAAATATGAGGATCTCAGTGAAATTCTTGGACTCAAGAGGATGAATTCTGAAAGCAGTTCAGAATTGTCGTCAATGCTGCCCGTGACCAGTTATGCGGCAGAAAGGGACAACACGGCCTGTTCTAACAACACAAGCAAATATCAGCAGGAATATAGTGCTACTGGACAAGCATCTGGTGCATATGCTGATGAAATTAACCGAGGAGGAGTTCAATTCGGCCCCACGACACCGCCCTTGTATGCACGGGAATCACCTCGTTTGTATTATCCGACTGGGGCTGGATTGGGAGATTTTCCTGCAACTGGGCAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATATTGCCAAGGCCTAATGATGGGAAACTTAGATATGTAAGTGGAGAAACGCGAATTATATCCATTAGGAAAAACATCTCTTGGGAAGAACTTACCAATAAGACATATGCTGTCTGTAAATATTCCCACACTATAAAGTACCAGCTTCCTGGTGAAGATCTTGATTCACTTATTTCTGTCTGTTCTGATGAGGATCTTCATCATATGATAGAGGAATATCATGAGCTGGAAAATGCAGGGGGGTCTCAAAAACTTAGAATTTTTCTTATTTCTTCAAATGATTGTTTTGAGAGCCCTACTTCAACTGAAGGAATGGTAGCTCAACCAATTAATCAATATGTTGCTGCTGTGAATGGTATGCTAGACTCAAGTCTTGAAAGGAGCTTTAGTGAAGAATTTGTGCCTGCACCAAACTGGGGTCGAAGCGATACACATTCAATGAAACCTATGCTCAAGGAACGGGCAGTTAATTATGAACAACTATGCTCTGATGCCGAATATTTGGTGCCGTTAAGATCTGGAACCACCCATATGAGGCAAAGAATAATACATTCACATTCTGAGCCACTACTACAGGAACAGGATCAAAAGGCAAAATATGGAGAACCTTATCCACTAAACTCATTCAATCATAGTGATCAATCATCTTCACCGACAATGTCGAGTTCCTCCCAGGATTTGCGAACGATGTGGAAGCAGAGAGTTGACAGGGAATTTCAAGATTCTAAATATGATAATCATGGAAAGTTTGCGTCTGGTAGTGAGAATGAAGAATATGAAGAATGCAACTTCCATGGAAAAAAGGCTAACTTCAATGGAAATGTTTATGTTCCATCACTTAATGATGACAAAAAATACAAATATTTCCAACATGTTGACTACCAACAAAATGGACAAACCCTCGAAGGCAAAACTTCTGCAGGTCAACAAACTACTTCTGATGTTGTAAGGAGTCAACCTTTGTCTTGCGCATCTTCTGATCTACTACCCCTTACAACTCGAGCTTTGAGCAACAGAAAGATCATAAATCAAGAATCAACATGGGATAGTCCTGCTTCAGGTAGAGAGTATTCGCTAGGCGACGAGAACTTCGTAACGTGTAATTACCGCAAGGTTGAAGCCCATAGAAGAAAAAAAAGCAACTATGATGATGCTTTCTTTATCAAATCATCACACTCAGATGATTCTCATAGTAATGAGGACGAGGAGTTAGCCGTAATAGTTGAAGATGTAACTAATGGTACACCTTCTGATATACCCTTAGCTTCTGAAGTTGTCCCACGGGTTGAAAATGAGGCCAGTGATGAATCTCCATGTTCAAGAGGAAATTATGATCTAAGTTCTAGTACAGAAACTGATCATGAGGATGCAGACAGTATTCTTAGCTCTAGGGATGAGTCTATGAGCGAGGCAGCAATAGCTGAAATTGAAGCTGGCATCTATGGCCTGCAGATTATAAAGAATTCAGATCTTGAAGACCTGCAGGAGCTAGGATCTGGGACGTTTGGCACAGTTTTTCATGGAAAGTGGAGAGGGACGGATGTTGCCATTAAGAGAATTAAAAAGAGTTGCTTTGCAGGCAGTTTACCAGAGCAAGAACGATTGATTAGAGATTTCTGGAGAGAAGCAAGGATCCTATCGACTCTTCACCATCCGAACGTGGTAGCTTTTTATGGAGTGGTTCCGGACGGACCGGATGGAACATTGGCCACTGTCACCGAGTATATGGTAAACGGCTCATTAAGGCATGTCCTGCTGAGAAAGGATAGAGTGCTTGATCGTCGGAAAAGGCTTATAATCGCAATGGATGCGGCTTTCGGCATGGAATACTTGCATTTGAAAAACATTGTTCATTTTGATCTGAAGTGTGATAACTTGTTAGTCAACCTGAGGGATCCTGAACGACCCATTTGCAAGGTTGGAGATTTTGGATTGTCGAGAATTAAACGGAACACACTTGTTTCTGGAGGCGTCCGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGATAGTAGCAGTTCCAAGGTCTCTGAGAAGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACAGGCGAGGAGCCATATGCTAACATGCATTGTGGTGCCATCATTGGTGGAATTGTAAGTAATACGCTTAGACCGCCGATCCCGAAACGCTGCGATCGCGAATGGAAAAGGCTAATGGAAGAGTGTTGGTCAGCTGAACCTGCAGCAAGGCCATCATTCTCAGAGATAACGAATAGACTTCGCAGCATGTCGGTAGCGCTACAGATCAAAAGGAGGCCAAATGTTGCAAGTGGATGA 2898 42.27 MAREVYGTLNKQLYMERRRAISNVRITADHGANDVCSQTGEVFSPQFMRDRTGLRRFSDEDQLQQQKKVSAIGFNPSNQLKYEDLSEILGLKRMNSESSSELSSMLPVTSYAAERDNTACSNNTSKYQQEYSATGQASGAYADEINRGGVQFGPTTPPLYARESPRLYYPTGAGLGDFPATGQMKFLCSFGGRILPRPNDGKLRYVSGETRIISIRKNISWEELTNKTYAVCKYSHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYHELENAGGSQKLRIFLISSNDCFESPTSTEGMVAQPINQYVAAVNGMLDSSLERSFSEEFVPAPNWGRSDTHSMKPMLKERAVNYEQLCSDAEYLVPLRSGTTHMRQRIIHSHSEPLLQEQDQKAKYGEPYPLNSFNHSDQSSSPTMSSSSQDLRTMWKQRVDREFQDSKYDNHGKFASGSENEEYEECNFHGKKANFNGNVYVPSLNDDKKYKYFQHVDYQQNGQTLEGKTSAGQQTTSDVVRSQPLSCASSDLLPLTTRALSNRKIINQESTWDSPASGREYSLGDENFVTCNYRKVEAHRRKKSNYDDAFFIKSSHSDDSHSNEDEELAVIVEDVTNGTPSDIPLASEVVPRVENEASDESPCSRGNYDLSSSTETDHEDADSILSSRDESMSEAAIAEIEAGIYGLQIIKNSDLEDLQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFAGSLPEQERLIRDFWREARILSTLHHPNVVAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDRVLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSSSSKVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDREWKRLMEECWSAEPAARPSFSEITNRLRSMSVALQIKRRPNVASG 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50722203 50727540 + Sed0020766.1 Sed02g1472 705140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1472 965 SUPERFAMILY CAD & PB1 domains 199 287 - -
Sed02g1472 965 MobiDBLite consensus disorder prediction 606 657 - -
Sed02g1472 965 PANTHER SERINE-THREONINE PROTEIN KINASE 127 951 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed02g1472 965 ProSiteProfiles Protein kinase domain profile. 684 954 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1472 965 MobiDBLite consensus disorder prediction 400 422 - -
Sed02g1472 965 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 677 771 - -
Sed02g1472 965 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 203 285 - -
Sed02g1472 965 CDD STKc_MAP3K-like 690 947 - -
Sed02g1472 965 Gene3D Phosphorylase Kinase; domain 1 677 771 - -
Sed02g1472 965 Pfam PB1 domain 199 282 IPR000270 GO:0005515(InterPro)
Sed02g1472 965 Gene3D - 202 286 - -
Sed02g1472 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1472 965 CDD PB1_UP2 187 283 - -
Sed02g1472 965 ProSitePatterns Protein kinases ATP-binding region signature. 690 715 IPR017441 GO:0005524(InterPro)
Sed02g1472 965 MobiDBLite consensus disorder prediction 641 656 - -
Sed02g1472 965 SUPERFAMILY Protein kinase-like (PK-like) 673 946 IPR011009 -
Sed02g1472 965 MobiDBLite consensus disorder prediction 394 422 - -
Sed02g1472 965 Gene3D Transferase(Phosphotransferase) domain 1 772 962 - -
Sed02g1472 965 Pfam Protein tyrosine and serine/threonine kinase 687 947 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1472 965 SMART serkin_6 684 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1472 965 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 772 963 - -
Sed02g1472 965 PRINTS Tyrosine kinase catalytic domain signature 803 821 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1472 965 PRINTS Tyrosine kinase catalytic domain signature 766 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1472 965 PRINTS Tyrosine kinase catalytic domain signature 918 940 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1472 965 PRINTS Tyrosine kinase catalytic domain signature 874 896 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1472 965 SMART PB1_new 198 285 IPR000270 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1472 Sed-Chr2:50722203 Sed05g3305 Sed-Chr5:42413300 1.90E-153 dispersed
Sed12g2472 Sed-Chr12:34323145 Sed02g1472 Sed-Chr2:50722203 7.20E-22 dispersed
Sed12g0406 Sed-Chr12:2437291 Sed02g1472 Sed-Chr2:50722203 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78828 PF07714 PK_Tyr_Ser-Thr 3.80E-62 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1472 - - - 0.0