Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1472 | ATGGCTAGGGAAGTATATGGCACTTTAAACAAACAATTATACATGGAACGACGGAGGGCTATTTCGAATGTCCGAATTACTGCAGATCATGGTGCGAATGATGTTTGTTCTCAGACGGGTGAAGTATTTTCTCCTCAGTTTATGCGGGATCGAACTGGTTTGAGAAGATTTTCGGATGAAGATCAACTACAGCAGCAGAAAAAGGTATCAGCTATTGGTTTCAATCCGAGCAACCAACTGAAATATGAGGATCTCAGTGAAATTCTTGGACTCAAGAGGATGAATTCTGAAAGCAGTTCAGAATTGTCGTCAATGCTGCCCGTGACCAGTTATGCGGCAGAAAGGGACAACACGGCCTGTTCTAACAACACAAGCAAATATCAGCAGGAATATAGTGCTACTGGACAAGCATCTGGTGCATATGCTGATGAAATTAACCGAGGAGGAGTTCAATTCGGCCCCACGACACCGCCCTTGTATGCACGGGAATCACCTCGTTTGTATTATCCGACTGGGGCTGGATTGGGAGATTTTCCTGCAACTGGGCAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATATTGCCAAGGCCTAATGATGGGAAACTTAGATATGTAAGTGGAGAAACGCGAATTATATCCATTAGGAAAAACATCTCTTGGGAAGAACTTACCAATAAGACATATGCTGTCTGTAAATATTCCCACACTATAAAGTACCAGCTTCCTGGTGAAGATCTTGATTCACTTATTTCTGTCTGTTCTGATGAGGATCTTCATCATATGATAGAGGAATATCATGAGCTGGAAAATGCAGGGGGGTCTCAAAAACTTAGAATTTTTCTTATTTCTTCAAATGATTGTTTTGAGAGCCCTACTTCAACTGAAGGAATGGTAGCTCAACCAATTAATCAATATGTTGCTGCTGTGAATGGTATGCTAGACTCAAGTCTTGAAAGGAGCTTTAGTGAAGAATTTGTGCCTGCACCAAACTGGGGTCGAAGCGATACACATTCAATGAAACCTATGCTCAAGGAACGGGCAGTTAATTATGAACAACTATGCTCTGATGCCGAATATTTGGTGCCGTTAAGATCTGGAACCACCCATATGAGGCAAAGAATAATACATTCACATTCTGAGCCACTACTACAGGAACAGGATCAAAAGGCAAAATATGGAGAACCTTATCCACTAAACTCATTCAATCATAGTGATCAATCATCTTCACCGACAATGTCGAGTTCCTCCCAGGATTTGCGAACGATGTGGAAGCAGAGAGTTGACAGGGAATTTCAAGATTCTAAATATGATAATCATGGAAAGTTTGCGTCTGGTAGTGAGAATGAAGAATATGAAGAATGCAACTTCCATGGAAAAAAGGCTAACTTCAATGGAAATGTTTATGTTCCATCACTTAATGATGACAAAAAATACAAATATTTCCAACATGTTGACTACCAACAAAATGGACAAACCCTCGAAGGCAAAACTTCTGCAGGTCAACAAACTACTTCTGATGTTGTAAGGAGTCAACCTTTGTCTTGCGCATCTTCTGATCTACTACCCCTTACAACTCGAGCTTTGAGCAACAGAAAGATCATAAATCAAGAATCAACATGGGATAGTCCTGCTTCAGGTAGAGAGTATTCGCTAGGCGACGAGAACTTCGTAACGTGTAATTACCGCAAGGTTGAAGCCCATAGAAGAAAAAAAAGCAACTATGATGATGCTTTCTTTATCAAATCATCACACTCAGATGATTCTCATAGTAATGAGGACGAGGAGTTAGCCGTAATAGTTGAAGATGTAACTAATGGTACACCTTCTGATATACCCTTAGCTTCTGAAGTTGTCCCACGGGTTGAAAATGAGGCCAGTGATGAATCTCCATGTTCAAGAGGAAATTATGATCTAAGTTCTAGTACAGAAACTGATCATGAGGATGCAGACAGTATTCTTAGCTCTAGGGATGAGTCTATGAGCGAGGCAGCAATAGCTGAAATTGAAGCTGGCATCTATGGCCTGCAGATTATAAAGAATTCAGATCTTGAAGACCTGCAGGAGCTAGGATCTGGGACGTTTGGCACAGTTTTTCATGGAAAGTGGAGAGGGACGGATGTTGCCATTAAGAGAATTAAAAAGAGTTGCTTTGCAGGCAGTTTACCAGAGCAAGAACGATTGATTAGAGATTTCTGGAGAGAAGCAAGGATCCTATCGACTCTTCACCATCCGAACGTGGTAGCTTTTTATGGAGTGGTTCCGGACGGACCGGATGGAACATTGGCCACTGTCACCGAGTATATGGTAAACGGCTCATTAAGGCATGTCCTGCTGAGAAAGGATAGAGTGCTTGATCGTCGGAAAAGGCTTATAATCGCAATGGATGCGGCTTTCGGCATGGAATACTTGCATTTGAAAAACATTGTTCATTTTGATCTGAAGTGTGATAACTTGTTAGTCAACCTGAGGGATCCTGAACGACCCATTTGCAAGGTTGGAGATTTTGGATTGTCGAGAATTAAACGGAACACACTTGTTTCTGGAGGCGTCCGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGATAGTAGCAGTTCCAAGGTCTCTGAGAAGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACAGGCGAGGAGCCATATGCTAACATGCATTGTGGTGCCATCATTGGTGGAATTGTAAGTAATACGCTTAGACCGCCGATCCCGAAACGCTGCGATCGCGAATGGAAAAGGCTAATGGAAGAGTGTTGGTCAGCTGAACCTGCAGCAAGGCCATCATTCTCAGAGATAACGAATAGACTTCGCAGCATGTCGGTAGCGCTACAGATCAAAAGGAGGCCAAATGTTGCAAGTGGATGA | 2898 | 42.27 | MAREVYGTLNKQLYMERRRAISNVRITADHGANDVCSQTGEVFSPQFMRDRTGLRRFSDEDQLQQQKKVSAIGFNPSNQLKYEDLSEILGLKRMNSESSSELSSMLPVTSYAAERDNTACSNNTSKYQQEYSATGQASGAYADEINRGGVQFGPTTPPLYARESPRLYYPTGAGLGDFPATGQMKFLCSFGGRILPRPNDGKLRYVSGETRIISIRKNISWEELTNKTYAVCKYSHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYHELENAGGSQKLRIFLISSNDCFESPTSTEGMVAQPINQYVAAVNGMLDSSLERSFSEEFVPAPNWGRSDTHSMKPMLKERAVNYEQLCSDAEYLVPLRSGTTHMRQRIIHSHSEPLLQEQDQKAKYGEPYPLNSFNHSDQSSSPTMSSSSQDLRTMWKQRVDREFQDSKYDNHGKFASGSENEEYEECNFHGKKANFNGNVYVPSLNDDKKYKYFQHVDYQQNGQTLEGKTSAGQQTTSDVVRSQPLSCASSDLLPLTTRALSNRKIINQESTWDSPASGREYSLGDENFVTCNYRKVEAHRRKKSNYDDAFFIKSSHSDDSHSNEDEELAVIVEDVTNGTPSDIPLASEVVPRVENEASDESPCSRGNYDLSSSTETDHEDADSILSSRDESMSEAAIAEIEAGIYGLQIIKNSDLEDLQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFAGSLPEQERLIRDFWREARILSTLHHPNVVAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDRVLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSSSSKVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDREWKRLMEECWSAEPAARPSFSEITNRLRSMSVALQIKRRPNVASG | 965 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50722203 | 50727540 | + | Sed0020766.1 | Sed02g1472 | 705140 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1472 | 965 | SUPERFAMILY | CAD & PB1 domains | 199 | 287 | - | - | |
Sed02g1472 | 965 | MobiDBLite | consensus disorder prediction | 606 | 657 | - | - | |
Sed02g1472 | 965 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 127 | 951 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Sed02g1472 | 965 | ProSiteProfiles | Protein kinase domain profile. | 684 | 954 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g1472 | 965 | MobiDBLite | consensus disorder prediction | 400 | 422 | - | - | |
Sed02g1472 | 965 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 677 | 771 | - | - | |
Sed02g1472 | 965 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 203 | 285 | - | - | |
Sed02g1472 | 965 | CDD | STKc_MAP3K-like | 690 | 947 | - | - | |
Sed02g1472 | 965 | Gene3D | Phosphorylase Kinase; domain 1 | 677 | 771 | - | - | |
Sed02g1472 | 965 | Pfam | PB1 domain | 199 | 282 | IPR000270 | GO:0005515(InterPro) | |
Sed02g1472 | 965 | Gene3D | - | 202 | 286 | - | - | |
Sed02g1472 | 965 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 809 | 821 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1472 | 965 | CDD | PB1_UP2 | 187 | 283 | - | - | |
Sed02g1472 | 965 | ProSitePatterns | Protein kinases ATP-binding region signature. | 690 | 715 | IPR017441 | GO:0005524(InterPro) | |
Sed02g1472 | 965 | MobiDBLite | consensus disorder prediction | 641 | 656 | - | - | |
Sed02g1472 | 965 | SUPERFAMILY | Protein kinase-like (PK-like) | 673 | 946 | IPR011009 | - | |
Sed02g1472 | 965 | MobiDBLite | consensus disorder prediction | 394 | 422 | - | - | |
Sed02g1472 | 965 | Gene3D | Transferase(Phosphotransferase) domain 1 | 772 | 962 | - | - | |
Sed02g1472 | 965 | Pfam | Protein tyrosine and serine/threonine kinase | 687 | 947 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1472 | 965 | SMART | serkin_6 | 684 | 953 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g1472 | 965 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 772 | 963 | - | - | |
Sed02g1472 | 965 | PRINTS | Tyrosine kinase catalytic domain signature | 803 | 821 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1472 | 965 | PRINTS | Tyrosine kinase catalytic domain signature | 766 | 779 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1472 | 965 | PRINTS | Tyrosine kinase catalytic domain signature | 918 | 940 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1472 | 965 | PRINTS | Tyrosine kinase catalytic domain signature | 874 | 896 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1472 | 965 | SMART | PB1_new | 198 | 285 | IPR000270 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1472 | Sed-Chr2:50722203 | Sed05g3305 | Sed-Chr5:42413300 | 1.90E-153 | dispersed | |
Sed12g2472 | Sed-Chr12:34323145 | Sed02g1472 | Sed-Chr2:50722203 | 7.20E-22 | dispersed | |
Sed12g0406 | Sed-Chr12:2437291 | Sed02g1472 | Sed-Chr2:50722203 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78828 | PF07714 | PK_Tyr_Ser-Thr | 3.80E-62 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1472 | - | - | - | 0.0 |