Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1491 ATGGAAAAAGACGATAATTACACGAGTAAGGAAGCTCCAATGCCTCCAAATTTCTACAACAGCCAAGACGAATTCATGAGGTCTCGCCCTCACGAGACCTCCGGCGACAACTCCGCCGGAATCCTCTCCTATTTTCCGGCCAACCCTCCACCGCCACCGCCGCCGCCTCTGCAGCCGATAACTTCTCTGGACAAACTCAGCTTCGCGGAGGTTATGCAGTTCGCCGACTTCGGCCCGAAGCTCAGCGTCAACCGGTTCGACGAGCAGGAAGAACCGGCCGGGATGGACCCGGTCTACTTCCTGAAATTCCCGGTTCTGAACAACGAGATGGCGGAGGATGCGGCGGCCCGGGAGGAGGAGGAAATTGGAGGGAGAATCGTGGGGGAATTAGAAGAAGAGGAAAATTTTAGAAATAATAATCATAATAATAATAATAAAAGGAAAAGAGGAAGGGCGGTGAAAACAAGTGAAGAAGTGGAGAGTCAGAGAATGACGCATATTGCTGTGGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGAGTTTTGCGCTCTCTCATGCCTGGTTCCTACGTTCAAAGGGGAGATCAAGCTTCAATAATCGGCGGAGCAATAGAGTTCGTGAGGGAGCTGGAGCAGCTCCTCCAGTGTTTAGAATCCCAGAAACGGCGTCGTATCCTTGGAGAGCCGCCACTCCCGGCCCCCGACGCGACGGCGCCGCCAGCCGGAGCAGGTAACTTTGGGCCACATCATCATCAAAACGACGGGCAAATGTTCGAAACGACGGCAGAGAGCAAATCGTGCCTTGCTGACGTGGAAGTGAAGGTTGTAGGGTTTGACGCAATGATAAAAATCCTGTCGAGAAGACGGCCGGGACAGCTCATCAAAGCCATTGCCGCGCTGGAAGATTTGCAGCTCAGTATTCTTCACACCAATATCACCACCATTGAACAAACTGTTCTTTATTCCTTCAACGTCAAGGTAGCAAACGAGTCAAGGTTTACTGCAGAAGATATAGCAAGTTCCGTTCAACAAATATTTAGTTTTATACACGCAAACACCGGCATGTAA 1074 50.56 MEKDDNYTSKEAPMPPNFYNSQDEFMRSRPHETSGDNSAGILSYFPANPPPPPPPPLQPITSLDKLSFAEVMQFADFGPKLSVNRFDEQEEPAGMDPVYFLKFPVLNNEMAEDAAAREEEEIGGRIVGELEEEENFRNNNHNNNNKRKRGRAVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEPPLPAPDATAPPAGAGNFGPHHHQNDGQMFETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLSILHTNITTIEQTVLYSFNVKVANESRFTAEDIASSVQQIFSFIHANTGM 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50854112 50858547 + Sed0018555.1 Sed02g1491 705159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1491 357 Pfam Helix-loop-helix DNA-binding domain 162 213 IPR011598 GO:0046983(InterPro)
Sed02g1491 357 Gene3D - 152 226 IPR036638 GO:0046983(InterPro)
Sed02g1491 357 MobiDBLite consensus disorder prediction 135 163 - -
Sed02g1491 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 212 IPR011598 GO:0046983(InterPro)
Sed02g1491 357 SMART finulus 167 218 IPR011598 GO:0046983(InterPro)
Sed02g1491 357 FunFam Basic helix-loop-helix transcription factor 152 227 - -
Sed02g1491 357 MobiDBLite consensus disorder prediction 1 55 - -
Sed02g1491 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 231 IPR036638 GO:0046983(InterPro)
Sed02g1491 357 MobiDBLite consensus disorder prediction 228 257 - -
Sed02g1491 357 PANTHER TRANSCRIPTION FACTOR FAMA 90 350 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Sed02g1491 357 CDD bHLH_AtFAMA_like 164 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1269 Sed-Chr2:49393077 Sed02g1491 Sed-Chr2:50854112 4.40E-38 dispersed
Sed02g1270 Sed-Chr2:49393077 Sed02g1491 Sed-Chr2:50854112 2.00E-34 dispersed
Sed02g1491 Sed-Chr2:50854112 Sed11g0309 Sed-Chr11:2818125 3.40E-39 dispersed
Sed02g1491 Sed-Chr2:50854112 Sed02g1492 Sed-Chr2:50855331 2.20E-171 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37648 PF00010 HLH 7.10E-10 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1491 K26213 - csv:101214530 467.233