Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1491 | ATGGAAAAAGACGATAATTACACGAGTAAGGAAGCTCCAATGCCTCCAAATTTCTACAACAGCCAAGACGAATTCATGAGGTCTCGCCCTCACGAGACCTCCGGCGACAACTCCGCCGGAATCCTCTCCTATTTTCCGGCCAACCCTCCACCGCCACCGCCGCCGCCTCTGCAGCCGATAACTTCTCTGGACAAACTCAGCTTCGCGGAGGTTATGCAGTTCGCCGACTTCGGCCCGAAGCTCAGCGTCAACCGGTTCGACGAGCAGGAAGAACCGGCCGGGATGGACCCGGTCTACTTCCTGAAATTCCCGGTTCTGAACAACGAGATGGCGGAGGATGCGGCGGCCCGGGAGGAGGAGGAAATTGGAGGGAGAATCGTGGGGGAATTAGAAGAAGAGGAAAATTTTAGAAATAATAATCATAATAATAATAATAAAAGGAAAAGAGGAAGGGCGGTGAAAACAAGTGAAGAAGTGGAGAGTCAGAGAATGACGCATATTGCTGTGGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGAGTTTTGCGCTCTCTCATGCCTGGTTCCTACGTTCAAAGGGGAGATCAAGCTTCAATAATCGGCGGAGCAATAGAGTTCGTGAGGGAGCTGGAGCAGCTCCTCCAGTGTTTAGAATCCCAGAAACGGCGTCGTATCCTTGGAGAGCCGCCACTCCCGGCCCCCGACGCGACGGCGCCGCCAGCCGGAGCAGGTAACTTTGGGCCACATCATCATCAAAACGACGGGCAAATGTTCGAAACGACGGCAGAGAGCAAATCGTGCCTTGCTGACGTGGAAGTGAAGGTTGTAGGGTTTGACGCAATGATAAAAATCCTGTCGAGAAGACGGCCGGGACAGCTCATCAAAGCCATTGCCGCGCTGGAAGATTTGCAGCTCAGTATTCTTCACACCAATATCACCACCATTGAACAAACTGTTCTTTATTCCTTCAACGTCAAGGTAGCAAACGAGTCAAGGTTTACTGCAGAAGATATAGCAAGTTCCGTTCAACAAATATTTAGTTTTATACACGCAAACACCGGCATGTAA | 1074 | 50.56 | MEKDDNYTSKEAPMPPNFYNSQDEFMRSRPHETSGDNSAGILSYFPANPPPPPPPPLQPITSLDKLSFAEVMQFADFGPKLSVNRFDEQEEPAGMDPVYFLKFPVLNNEMAEDAAAREEEEIGGRIVGELEEEENFRNNNHNNNNKRKRGRAVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEPPLPAPDATAPPAGAGNFGPHHHQNDGQMFETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLSILHTNITTIEQTVLYSFNVKVANESRFTAEDIASSVQQIFSFIHANTGM | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50854112 | 50858547 | + | Sed0018555.1 | Sed02g1491 | 705159 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1491 | 357 | Pfam | Helix-loop-helix DNA-binding domain | 162 | 213 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1491 | 357 | Gene3D | - | 152 | 226 | IPR036638 | GO:0046983(InterPro) | |
Sed02g1491 | 357 | MobiDBLite | consensus disorder prediction | 135 | 163 | - | - | |
Sed02g1491 | 357 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 161 | 212 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1491 | 357 | SMART | finulus | 167 | 218 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1491 | 357 | FunFam | Basic helix-loop-helix transcription factor | 152 | 227 | - | - | |
Sed02g1491 | 357 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Sed02g1491 | 357 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 161 | 231 | IPR036638 | GO:0046983(InterPro) | |
Sed02g1491 | 357 | MobiDBLite | consensus disorder prediction | 228 | 257 | - | - | |
Sed02g1491 | 357 | PANTHER | TRANSCRIPTION FACTOR FAMA | 90 | 350 | IPR044283 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER) | |
Sed02g1491 | 357 | CDD | bHLH_AtFAMA_like | 164 | 230 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1269 | Sed-Chr2:49393077 | Sed02g1491 | Sed-Chr2:50854112 | 4.40E-38 | dispersed | |
Sed02g1270 | Sed-Chr2:49393077 | Sed02g1491 | Sed-Chr2:50854112 | 2.00E-34 | dispersed | |
Sed02g1491 | Sed-Chr2:50854112 | Sed11g0309 | Sed-Chr11:2818125 | 3.40E-39 | dispersed | |
Sed02g1491 | Sed-Chr2:50854112 | Sed02g1492 | Sed-Chr2:50855331 | 2.20E-171 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37648 | PF00010 | HLH | 7.10E-10 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1491 | K26213 | - | csv:101214530 | 467.233 |