Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1492 ATGCCTCCAAATTTCTACAACAGCCAAGACGAATTCATGAGGTCTCGCCCTCACGAGACCTCCGGCGACAACTCCGCCGGAATCCTCTCCTATTTTCCGGCCAACCCTCCACCGCCACCGCCGCCGCCTCTGCAGCCGATAACTTCTCTGGACAAACTCAGCTTCGCGGAGGTTATGCAGTTCGCCGACTTCGGCCCGAAGCTCAGCGTCAACCGGTTCGACGAGCAGGAAGAACCGGCCGGGATGGACCCGGTCTACTTCCTGAAATTCCCGGTTCTGAACAACGAGATGGCGGAGGATGCGGCGGCCCGGGAGGAGGAGGAAATTGGAGGGAGAATCGTGGGGGAATTAGAAGAAGAGGAAAATTTTAGAAATAATAATCATAATAATAATAATAAAAGGAAAAGAGGAAGGGCGGTGAAAACAAGTGAAGAAGTGGAGAGTCAGAGAATGACGCATATTGCTGTGGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGAGTTTTGCGCTCTCTCATGCCTGGTTCCTACGTTCAAAGGGGAGATCAAGCTTCAATAATCGGCGGAGCAATAGAGTTCGTGAGGGAGCTGGAGCAGCTCCTCCAGTGTTTAGAATCCCAGAAACGGCGTCGTATCCTTGGAGAGCCGCCACTCCCGGCCCCCGACGCGACGGCGCCGCCAGCCGGAGCAGGTAACTTTGGGCCACATCATCATCAAAACGACGGGCAAATGTTCGAAACGACGGCAGAGAGCAAATCGTGCCTTGCTGACGTGGAAGTGAAGGTTGTAGGGTTTGACGCAATGATAAAAATCCTGTCGAGAAGACGGCCGGGACAGCTCATCAAAGCCATTGCCGCGCTGGAAGATTTGCAGCTCAGTATTCTTCACACCAATATCACCACCATTGAACAAACTGTTCTTTATTCCTTCAACGTCAAGGTAGCAAACGAGTCAAGGTTTACTGCAGAAGATATAGCAAGTTCCGTTCAACAAATATTTAGTTTTATACACGCAAACACCGGCATGTAA 1035 51.01 MPPNFYNSQDEFMRSRPHETSGDNSAGILSYFPANPPPPPPPPLQPITSLDKLSFAEVMQFADFGPKLSVNRFDEQEEPAGMDPVYFLKFPVLNNEMAEDAAAREEEEIGGRIVGELEEEENFRNNNHNNNNKRKRGRAVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEPPLPAPDATAPPAGAGNFGPHHHQNDGQMFETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLSILHTNITTIEQTVLYSFNVKVANESRFTAEDIASSVQQIFSFIHANTGM 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50855331 50858547 + Sed0018555.2 Sed02g1492 705160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1492 344 FunFam Basic helix-loop-helix transcription factor 139 214 - -
Sed02g1492 344 Gene3D - 139 213 IPR036638 GO:0046983(InterPro)
Sed02g1492 344 SMART finulus 154 205 IPR011598 GO:0046983(InterPro)
Sed02g1492 344 MobiDBLite consensus disorder prediction 1 48 - -
Sed02g1492 344 PANTHER TRANSCRIPTION FACTOR FAMA 78 337 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Sed02g1492 344 MobiDBLite consensus disorder prediction 32 47 - -
Sed02g1492 344 MobiDBLite consensus disorder prediction 137 151 - -
Sed02g1492 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 218 IPR036638 GO:0046983(InterPro)
Sed02g1492 344 CDD bHLH_AtFAMA_like 151 217 - -
Sed02g1492 344 MobiDBLite consensus disorder prediction 215 244 - -
Sed02g1492 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 199 IPR011598 GO:0046983(InterPro)
Sed02g1492 344 Pfam Helix-loop-helix DNA-binding domain 149 200 IPR011598 GO:0046983(InterPro)
Sed02g1492 344 MobiDBLite consensus disorder prediction 121 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1492 Sed-Chr2:50855331 Sed11g0309 Sed-Chr11:2818125 3.30E-39 dispersed
Sed02g1491 Sed-Chr2:50854112 Sed02g1492 Sed-Chr2:50855331 2.20E-171 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37649 PF00010 HLH 6.80E-10 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1492 K26213 - csv:101214530 453.366