Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1492 | ATGCCTCCAAATTTCTACAACAGCCAAGACGAATTCATGAGGTCTCGCCCTCACGAGACCTCCGGCGACAACTCCGCCGGAATCCTCTCCTATTTTCCGGCCAACCCTCCACCGCCACCGCCGCCGCCTCTGCAGCCGATAACTTCTCTGGACAAACTCAGCTTCGCGGAGGTTATGCAGTTCGCCGACTTCGGCCCGAAGCTCAGCGTCAACCGGTTCGACGAGCAGGAAGAACCGGCCGGGATGGACCCGGTCTACTTCCTGAAATTCCCGGTTCTGAACAACGAGATGGCGGAGGATGCGGCGGCCCGGGAGGAGGAGGAAATTGGAGGGAGAATCGTGGGGGAATTAGAAGAAGAGGAAAATTTTAGAAATAATAATCATAATAATAATAATAAAAGGAAAAGAGGAAGGGCGGTGAAAACAAGTGAAGAAGTGGAGAGTCAGAGAATGACGCATATTGCTGTGGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGAGTTTTGCGCTCTCTCATGCCTGGTTCCTACGTTCAAAGGGGAGATCAAGCTTCAATAATCGGCGGAGCAATAGAGTTCGTGAGGGAGCTGGAGCAGCTCCTCCAGTGTTTAGAATCCCAGAAACGGCGTCGTATCCTTGGAGAGCCGCCACTCCCGGCCCCCGACGCGACGGCGCCGCCAGCCGGAGCAGGTAACTTTGGGCCACATCATCATCAAAACGACGGGCAAATGTTCGAAACGACGGCAGAGAGCAAATCGTGCCTTGCTGACGTGGAAGTGAAGGTTGTAGGGTTTGACGCAATGATAAAAATCCTGTCGAGAAGACGGCCGGGACAGCTCATCAAAGCCATTGCCGCGCTGGAAGATTTGCAGCTCAGTATTCTTCACACCAATATCACCACCATTGAACAAACTGTTCTTTATTCCTTCAACGTCAAGGTAGCAAACGAGTCAAGGTTTACTGCAGAAGATATAGCAAGTTCCGTTCAACAAATATTTAGTTTTATACACGCAAACACCGGCATGTAA | 1035 | 51.01 | MPPNFYNSQDEFMRSRPHETSGDNSAGILSYFPANPPPPPPPPLQPITSLDKLSFAEVMQFADFGPKLSVNRFDEQEEPAGMDPVYFLKFPVLNNEMAEDAAAREEEEIGGRIVGELEEEENFRNNNHNNNNKRKRGRAVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEPPLPAPDATAPPAGAGNFGPHHHQNDGQMFETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLSILHTNITTIEQTVLYSFNVKVANESRFTAEDIASSVQQIFSFIHANTGM | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50855331 | 50858547 | + | Sed0018555.2 | Sed02g1492 | 705160 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1492 | 344 | FunFam | Basic helix-loop-helix transcription factor | 139 | 214 | - | - | |
Sed02g1492 | 344 | Gene3D | - | 139 | 213 | IPR036638 | GO:0046983(InterPro) | |
Sed02g1492 | 344 | SMART | finulus | 154 | 205 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1492 | 344 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Sed02g1492 | 344 | PANTHER | TRANSCRIPTION FACTOR FAMA | 78 | 337 | IPR044283 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER) | |
Sed02g1492 | 344 | MobiDBLite | consensus disorder prediction | 32 | 47 | - | - | |
Sed02g1492 | 344 | MobiDBLite | consensus disorder prediction | 137 | 151 | - | - | |
Sed02g1492 | 344 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 148 | 218 | IPR036638 | GO:0046983(InterPro) | |
Sed02g1492 | 344 | CDD | bHLH_AtFAMA_like | 151 | 217 | - | - | |
Sed02g1492 | 344 | MobiDBLite | consensus disorder prediction | 215 | 244 | - | - | |
Sed02g1492 | 344 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 148 | 199 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1492 | 344 | Pfam | Helix-loop-helix DNA-binding domain | 149 | 200 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1492 | 344 | MobiDBLite | consensus disorder prediction | 121 | 151 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1492 | Sed-Chr2:50855331 | Sed11g0309 | Sed-Chr11:2818125 | 3.30E-39 | dispersed | |
Sed02g1491 | Sed-Chr2:50854112 | Sed02g1492 | Sed-Chr2:50855331 | 2.20E-171 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37649 | PF00010 | HLH | 6.80E-10 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1492 | K26213 | - | csv:101214530 | 453.366 |