Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1495 ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCGGCCATTCCGGCGATGCCGATCGACGGCGGCGTCCACGGCAAGTTTCAGAGTTCTCTCGACGGAACGAATCTTCCAGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGTTGGACGGCGGAGCTCCACGAGCGATTCGTCGACGCCGTCACTCAGCTCGGCGGTCCTGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTTAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATACCGGCTCGGGAAGCAATCGTTCAAGGAATTGATTGAGAACTCAAAAGATGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGCTCCTGTTCGTCGCCATCTTCCCGAATAATGACACAGGATCTGAATGACGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGCCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAATTGATACTCGAGCGAGCTTGTCAAGCTTTGAGCGATCAGACTGCAGCATCTACGGGACTCGAAGCTGCGAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGACTCTAAAGAGATGGCACCATTGGAGTCTCAAAAAGTGCTTCCCTTCTCAGAACTTGCTGCTGCTCTAGAAAACCGAAAAGCTCCTGCCATTATGGCTCGAATAGGCGATTGCTCCATGGATAGCTGCTTGACATCTGCTGGTAGCCCGGTTTCTCCCATCAGAGTAGGATCAACTGGCACCGCAATGAAAAGACCGAGACCAGTTTTTAGCCATGGAGATTCGATGGCTCTCGAGGGCAATGCGCGCCACGAAGTCGAGTGGATGATGAGTAATATTGGATGA 951 51.0 MLSGFSQEPAGMYSAIPAMPIDGGVHGKFQSSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKELIENSKDASCMAESQETSSCSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQLILERACQALSDQTAASTGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFSELAAALENRKAPAIMARIGDCSMDSCLTSAGSPVSPIRVGSTGTAMKRPRPVFSHGDSMALEGNARHEVEWMMSNIG 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50894519 50898822 + Sed0003960.1 Sed02g1495 705163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1495 316 FunFam Myb family transcription factor 50 108 - -
Sed02g1495 316 Gene3D - 50 109 - -
Sed02g1495 316 Pfam Myb-like DNA-binding domain 53 104 IPR001005 -
Sed02g1495 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Sed02g1495 316 SUPERFAMILY Homeodomain-like 51 108 IPR009057 -
Sed02g1495 316 Pfam MYB-CC type transfactor, LHEQLE motif 149 194 IPR025756 -
Sed02g1495 316 Coils Coil 206 226 - -
Sed02g1495 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 27 282 IPR046955 GO:0003700(InterPro)
Sed02g1495 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1495 Sed-Chr2:50894519 Sed12g0382 Sed-Chr12:2306597 5.50E-81 dispersed
Sed12g0380 Sed-Chr12:2306597 Sed02g1495 Sed-Chr2:50894519 4.00E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37650 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1495 - - - 0.0