Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1520 ATGGCTAGGAGTTCGAAAGTACCAGAATTTGGTAAGTGGGAAGGTGGGGAAGATGTCCCATATACAGCTTATTTTGACAAGGCATCAAAGGCCAAGTCTGAGAGGAAGAAATCAAATGACCCTTCTCTTCAACGAGAGGAGATTTCGGAAACAGTAAGCTCAAAAAATGTGCAACACAAAACCAGAGAAGGTGTCCACGGGAGGAAGGAAACCGAGTCTCCATTGCATTGTGATGCTTTGGAATTGCGTGATCAGGATAATGATGGTCTAAAGTCAGAAAAGAATCCAGATCAACAAGCATCAAGGTCAAAGCACACGCGAGAGGATTTGAACTTGGAAGATGGTAACACGAAGAAACATCGTGATTCTTCTTTGGAACATCAAACTAGGGAGGGTCAGGAGGTTAGTTTTAACTCCCCTCTTCCTCAACTTCAAGCGAACAACACGGCCAGTACAAAAAATGTCGCAGGTTCTGACTGTATCATAGAAAATTCACCTCTCCAGCTTCCAACGACCGAAGCGAAAACCGTTGTACCAGCTTCACCGATACGGGACAGTAGGGGTTCTGGTTCACCTAAAGGAGGTAGGCATGATTTCATAGCCTCCTCGACTCCTGGAAGATCACGTCAACGATCTGTTCCTCAGGGCAATGAAACCGTAGTTTCTTTTTCCTTCCTTTTCTTTATATTTAATTGCTCTAGAAAGGCATCAAAAGATTTGGATATAGTATTAATCAACCAGATAAAGGTTGATCAAGAAAATGGTGTTTTGAGTATAATTTTCAGATTTTAA 792 42.3 MARSSKVPEFGKWEGGEDVPYTAYFDKASKAKSERKKSNDPSLQREEISETVSSKNVQHKTREGVHGRKETESPLHCDALELRDQDNDGLKSEKNPDQQASRSKHTREDLNLEDGNTKKHRDSSLEHQTREGQEVSFNSPLPQLQANNTASTKNVAGSDCIIENSPLQLPTTEAKTVVPASPIRDSRGSGSPKGGRHDFIASSTPGRSRQRSVPQGNETVVSFSFLFFIFNCSRKASKDLDIVLINQIKVDQENGVLSIIFRF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50957876 50963501 + Sed0014975.4 Sed02g1520 705188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1520 263 MobiDBLite consensus disorder prediction 52 129 - -
Sed02g1520 263 MobiDBLite consensus disorder prediction 28 44 - -
Sed02g1520 263 MobiDBLite consensus disorder prediction 1 145 - -
Sed02g1520 263 MobiDBLite consensus disorder prediction 130 145 - -
Sed02g1520 263 MobiDBLite consensus disorder prediction 172 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1520 K13456 - - csv:101211635 236.498
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1518 Sed-Chr2:50957876 Sed02g1520 Sed-Chr2:50957876 2.70E-119 dispersed
Sed02g1520 Sed-Chr2:50957876 Sed12g0366 Sed-Chr12:2235460 6.20E-62 dispersed
Sed02g1519 Sed-Chr2:50957876 Sed02g1520 Sed-Chr2:50957876 5.60E-118 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g946 . . . . . . . . . . . . . Car14g01704 Sed02g1520 . Cpe03g01603 Bhi01g00211 Tan10g0505 Cmetu06g1239 . . . . . . . . . . . . . Cone7ag0404 . Lsi05g01853 . . Cme06g00373 . . Bda11g00342 . . Bpe13g00864 . Bma06g01276 . . Cmo14g01956 . . . . . . . . . . . . . Cla05g00337 Cam05g0370 Cec05g0374 Cco05g0375 Clacu05g0364 Cmu05g0349 Cre05g0413 . Csa03g01084 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003340 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 9 1 1 49