Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1522 ATGGAAGCCAAGATTGCTTTCACATCGATTGCCGCCCCATCCGTCTCTTCCCTTCTCTCCCCTTTTTCCCTTTCCCCATTTCTTCCTCCGCCGCTTTGCCGCCGCAAATCTCCTCCGTCTCCTCGTTCGATCGCCCCGCTCCGGCCGCCGTCCGCCGTCCCGTCTTACGCCAGGTTCGATCTCCTTTACTGTTTCCTTCATGCTACTGTTGTATTGCTTCAAATCTTGCTTGTTTTCTCTGATTTCTCGCCTCTAATTTCCGTTTTATGTATAAAGAAGGCTATCGGAATGAGCTTCTATCTACGTGACTGGAGTGCAAGAGTTGTTGAGAGAACATTAATGGACTTCGACCTAAATTGTCCGCCTCCAGATGAGTGCCACGTTCCAACTGGTCCTCACGAGGGAGCAGCACAGTACTACAATCATTACCAAGGACAAACTATGAACAATCCCGACTTTGTCGATGAGGACATTGCCATAATCTCCCCTAGGAAATTTGCTGAAGCCAGGAAGAATTTACGAAGAAACTATGAAAGGAACTGTGGTGTAGCCACTAGACGTAACGACAACACAGAAATTTATGGTACTCTCTCAGACTTATTGCATGTAACAAGCTGGCCTCCTTTTACAATTTGGCCGTCGCTTTCAATTAGCAATAGCAACGTACCCATACAGGAGCAAAGGAATCACAACTTGGACCTTTGCTTAAGCTGTGAAAGCAGTAGTAGGGCCACTAAGGCAACAATCGACACTGGCATTCCTTGTGCACTCGCACAAAGTAGTAACATCCCACCTCCAGCAGCACCGAGTTTGCGGTGTGCGATCTGCATAGAACCATTGGTCGACGAAACAACAACCAAATGTGGGCATGTTTTCTGCAGGAGCTGCATCGAAACAGCCATAGCTACCCAGCACAAATGTCCCATTTGTCGGCGTAAGCTTAGAAAACGAGATATTATCCGGATTTACCTTCCCTTTTCAACCTAA 987 47.42 MEAKIAFTSIAAPSVSSLLSPFSLSPFLPPPLCRRKSPPSPRSIAPLRPPSAVPSYARFDLLYCFLHATVVLLQILLVFSDFSPLISVLCIKKAIGMSFYLRDWSARVVERTLMDFDLNCPPPDECHVPTGPHEGAAQYYNHYQGQTMNNPDFVDEDIAIISPRKFAEARKNLRRNYERNCGVATRRNDNTEIYGTLSDLLHVTSWPPFTIWPSLSISNSNVPIQEQRNHNLDLCLSCESSSRATKATIDTGIPCALAQSSNIPPPAAPSLRCAICIEPLVDETTTKCGHVFCRSCIETAIATQHKCPICRRKLRKRDIIRIYLPFST 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50980671 50984247 + Sed0024686.1 Sed02g1522 705190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1522 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 324 IPR013083 -
Sed02g1522 328 Pfam Zinc finger, C3HC4 type (RING finger) 272 310 - -
Sed02g1522 328 SUPERFAMILY RING/U-box 268 324 - -
Sed02g1522 328 SMART ring_2 273 310 IPR001841 -
Sed02g1522 328 ProSitePatterns Zinc finger RING-type signature. 288 297 IPR017907 -
Sed02g1522 328 ProSiteProfiles Zinc finger RING-type profile. 273 311 IPR001841 -
Sed02g1522 328 PANTHER ELFLESS, ISOFORM B 137 326 IPR049627 GO:0061630(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1522 K22651 - - csv:101211386 324.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1522 Sed-Chr2:50980671 Sed05g0204 Sed-Chr5:1234542 1.70E-24 dispersed
Sed12g0361 Sed-Chr12:2228253 Sed02g1522 Sed-Chr2:50980671 7.00E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g943 . . . . . . . . . . . Cma14g01904 Car06g01058 . Sed02g1522 Cpe08g00408 Cpe03g01604 Bhi01g00204 Tan10g0502 Cmetu06g0591 . Hepe05g1772 . Lcy11g1787 . . . . . . . . . . . . . . Cme06g00371 . . . . . . . . . Cmo06g01242 Cmo14g01958 . . . . . . . . . . . . . Cla05g00335 Cam05g0367 Cec05g0371 Cco05g0372 Clacu05g0362 Cmu05g0347 Cre05g0411 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013959 0 1 0 0 0 1 1 1 1 0 1 1 2 1 1 2 1 0 2 1 0 1 1 1 1 0 0 2 1 0 24