Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1537 ATGGGTTCACTTGGAAACTCAAATCAATGGCAGCCATATGCTTACAAGGACTGTTCTTTAGAGATTTGCAGCATATATTGCCCTCAATGGTGCTACATAATCTTCCCTCCACCCCCACCTTTTGGCTATTATGCCAACACTGAATTCTCCCCTCTCATCATTGCCACCATTGGAATCTTAGCCACAGCCTTCATTTTGGTAATCTACTACACCATAATCTCCAAGTACTGCAACAACAGACCTGCCATTGAAGCCAATGATGGACAAAACTCTTCGCAAATTCACCGCGAAAACCGCCTCCAAGCTCCCCCGGCAGGCCTCGATGAGGCTCTCATCAAGTTCATCACAGTCTGCAAATACAAAAGAGGAGATGGATTGGTTGAAGGCACAGACTGCTCAGTTTGTTTGAGTGAATTTGAAGAAAATGAGAGCTTAAGGCTGTTGCCAAGTTGCAGCCATGCTTTTCATCTTCCTTGCATTGATACATGGCTCAAATCTCACTCGACTTGCCCTCTCTGCCGCTCCGACATTTCGCCCGCGAATCTTTTCGCACCCCCGGTTCAAGAAATTCAAAGAACCGAACTTTCGAATTCGTCTGGTTTTCGGTATCAGCATAGAAGCAATGACACAGTGGTGGTTGTCGTGGTTCAAGATTTGCAGGATTCAACAGTCAGCCAAGAAACTGCTGGTTTGAGGCTTGAAAATGGTGATGGTTCTTCCAAGAATCAAGTGAAAAGTTTTAATGATGTTGTTATTCAGCCATTTAGAAGGTCAGTTTCATTGAATTCTTTATCATGGCAAGGGCAGGTTTCTGTTGCTGATAGATTGAGAGCCAGTCAAGATAGTGAGGAAGATGAATTACAAATGGGGATTGGATCTCCAAAAGTATTTGTTCAAGAGAATTGCCATTTCATGAATAGATCTATTTCAGCTGGGAAACTGGATTCTACAAACTTGGGGAAAGGAAAGAGTTGCATCATTCCCAGTTGA 990 43.54 MGSLGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYYANTEFSPLIIATIGILATAFILVIYYTIISKYCNNRPAIEANDGQNSSQIHRENRLQAPPAGLDEALIKFITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPSCSHAFHLPCIDTWLKSHSTCPLCRSDISPANLFAPPVQEIQRTELSNSSGFRYQHRSNDTVVVVVVQDLQDSTVSQETAGLRLENGDGSSKNQVKSFNDVVIQPFRRSVSLNSLSWQGQVSVADRLRASQDSEEDELQMGIGSPKVFVQENCHFMNRSISAGKLDSTNLGKGKSCIIPS 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51076612 51077951 - Sed0020642.1 Sed02g1537 705205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1537 329 CDD RING-H2_EL5-like 131 174 - -
Sed02g1537 329 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Sed02g1537 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 181 IPR013083 -
Sed02g1537 329 Pfam Ring finger domain 131 174 IPR001841 -
Sed02g1537 329 SUPERFAMILY RING/U-box 126 180 - -
Sed02g1537 329 PANTHER RING-H2 FINGER PROTEIN ATL16 26 287 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Sed02g1537 329 SMART ring_2 132 173 IPR001841 -
Sed02g1537 329 FunFam RING-H2 finger protein ATL54 107 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1537 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1537 Sed-Chr2:51076612 Sed05g0301 Sed-Chr5:1911640 4.50E-62 dispersed
Sed14g0337 Sed-Chr14:3471502 Sed02g1537 Sed-Chr2:51076612 5.10E-06 dispersed
Sed02g1537 Sed-Chr2:51076612 Sed02g1542 Sed-Chr2:51115999 1.20E-14 proximal
Sed04g0986 Sed-Chr4:11380348 Sed02g1537 Sed-Chr2:51076612 6.60E-15 transposed
Sed12g0332 Sed-Chr12:2087502 Sed02g1537 Sed-Chr2:51076612 5.10E-129 wgd
Sed02g1537 Sed-Chr2:51076612 Sed04g2114 Sed-Chr4:35308499 1.70E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68