Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1541 ATGTTCCGACGAGCTTCATGCCTTCTGGCCCGTCCTCTCCTCTCCGGCCGGGCCAGATCCTTCTCCGCCGATCTGCCGGCGGCTCCGGTAACCGACGATGCCTTCGTCGCCGCCTGGAAGAAGACGATCCCCAATATTGATCCTCCTAAAACTCCTCTCTCTTTCATGGCTCCTCGTCCCGCTACGCCTACTTCCATCCCTACTAAGCTCACTGTCAACTTCGTTCTTCCTTATGCCTCAGAGCTCTCCGCCAAACAGGTTGACATGGTAATAATTCCAGCAACAACTGGGCAAATGGGAGTTCTTCCAGGTCATGTAGCTACAATTGCAGAGTTGAAGCCAGGAGTTCTATCGGTGCACGAAGAAGGCGAAACCAAAAAGTACTTCGTGAGCAGCGGTTTTGCATTCATCCATGGGAACTCGTATGCTGACATTATCGCTGTCGAAGCTGTGCCTGTAGACCAAATTGACGCCAGCCAAGTACAAAAGGGTCTTGCTGAATTCACCCAAAAGTTGAACTCTGCCTCAACAGATTTGGAGAAAGCCGAAGCCCAAATCGGAGTCGAGGTGCACAGTGCCCTGAATGCTGCCCTTACAGGATAG 603 52.24 MFRRASCLLARPLLSGRARSFSADLPAAPVTDDAFVAAWKKTIPNIDPPKTPLSFMAPRPATPTSIPTKLTVNFVLPYASELSAKQVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVHEEGETKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLEKAEAQIGVEVHSALNAALTG 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51103241 51107072 - Sed0013760.1 Sed02g1541 705209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1541 200 Hamap ATP synthase epsilon chain [atpC]. 68 188 IPR001469 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed02g1541 200 Gene3D - 58 156 IPR036771 -
Sed02g1541 200 Coils Coil 165 185 - -
Sed02g1541 200 Gene3D - 157 199 - -
Sed02g1541 200 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 70 141 IPR020546 GO:0015986(InterPro)
Sed02g1541 200 NCBIfam ATP synthase F1 subunit epsilon 83 186 IPR001469 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed02g1541 200 CDD F1-ATPase_delta 70 193 IPR001469 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed02g1541 200 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 26 200 IPR001469 GO:0000275(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Sed02g1541 200 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 70 151 IPR036771 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0322 Sed-Chr12:2002980 Sed02g1541 Sed-Chr2:51103241 9.00E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1541 K02134 - csv:101206104 346.665