Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g1557 | ATGGAGGGGAGTTGGGTAGTGGCGGCGGCAGCGACGGCGGTGGCGATGATAGTGGGGTTTGCAGTGGTGAAATGGGCGGCAAAAAGTTTGAATGAGTGGATTTATGAGGCTAAATTAGGGGACCGACGGATGGCTCTGCCGCCGGGAGATTTGGGGTGGCCTTTTATTGGGAACATGTTAGCTTTCTTTAGAGCCTTCAAATCCTCTAATCCTGAAACTTTCATCGATAGCTATGTTTCAAGGTTTGGGAAAACCGGAGTCTACAAGGTTCATTTGTTTGGAAACCCTAGCGTGGTAGTGACGACGCCGGAGACATGCCGGAAAGTGTTGACAGACGACGACGCCTTTCAGCCCGGCTGGCCACGCGCCGCCGTGGAACTCATCGGAAAGAAGTCCTTCATCGAAATGCCGGTGGAGGAGCACAAGCGTCTCCGCCGCTTAACCTCTGCGCCGGTGAACGGTTTCGAGGCACTGACCAATTACATTCCATATATCGAAGAAAATGTCTTGGAATCGTTGGAGAAATGGTCGAACATGGGACCGATCGAGTTCTTAACTCAACTTCGTAAGCTCACTTTCAAAATTATCATGTACATTTTCCTCAGCTCTGAGAGCGAACCGGTAATGGAGGCGTTGGAGAAGGAGTACACTCGGCTGAACTACGGCGTTCGAGCCATGAGAGTTAACCTTCCTGGATTTGCCTACTACAAAGCACTCAAGGCTCGGAAGAATCTTGTGGCTGCGTTGCAAGGAATTGTGACTGAACGAAGGATCCGAAAGTTGGACAAATCGGCGGTGAAGAGGAAGGACATGATGGACGCTCTGATTGATGTTGAAGATGAAGGTGGCAGAAAATTGACTGATGAGGAGATCATTGATATTCTGGTGATGTACTTGAATGCTGGTCATGAATCTTCAGGCCACACCATGATGTGGGCAACTATTTTGTTGAATGAACACCCTGAAGTTCTCAAGAAAGCCAAGGCGGAGCAGGAAGAGATTGTGAAGAGGAGGCCTGCTGGTCAAAAGGGATTGACATTGAAAGAATGCCGGGATATGGAATATCTCAACAAAGTTGTTGATGAGACTCTTCGCTATGTATCATTCTCCCTTGTTGTTTTCAGAGAGACACAAATGGATGTCAATCTCAATGGTTATCTAATTCCCAAGGGCTGGAAAGTGCTAGCTTGGTTCAGAAGCATTCACTATGACCCAGAAGTTTACCCAGATCCAAAGAAGTTTGATCCTTCAAGATGGGATGGGTTCATACCAAAAGCAGGAGAGTTTCTTCCATTTGGAGCAGGAAGCAGGCTGTGTCCAGGAAATGATCTAGCCAAATTGGAGATCTCCATTTTCGTCCACTACTTTCTTCTCAATTACAAGCTGGAATGGCTGACTCCTGATTGTCAAATCTTGTATCTCCCGCATTCAAGGCCGAAGGACAATTGCATCGCGAAAATCAGTAAGAAATAG | 1473 | 47.39 | MEGSWVVAAAATAVAMIVGFAVVKWAAKSLNEWIYEAKLGDRRMALPPGDLGWPFIGNMLAFFRAFKSSNPETFIDSYVSRFGKTGVYKVHLFGNPSVVVTTPETCRKVLTDDDAFQPGWPRAAVELIGKKSFIEMPVEEHKRLRRLTSAPVNGFEALTNYIPYIEENVLESLEKWSNMGPIEFLTQLRKLTFKIIMYIFLSSESEPVMEALEKEYTRLNYGVRAMRVNLPGFAYYKALKARKNLVAALQGIVTERRIRKLDKSAVKRKDMMDALIDVEDEGGRKLTDEEIIDILVMYLNAGHESSGHTMMWATILLNEHPEVLKKAKAEQEEIVKRRPAGQKGLTLKECRDMEYLNKVVDETLRYVSFSLVVFRETQMDVNLNGYLIPKGWKVLAWFRSIHYDPEVYPDPKKFDPSRWDGFIPKAGEFLPFGAGSRLCPGNDLAKLEISIFVHYFLLNYKLEWLTPDCQILYLPHSRPKDNCIAKISKK | 490 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 51234556 | 51241527 | + | Sed0025718.1 | Sed02g1557 | 705225 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g1557 | 490 | CDD | CYP90-like | 79 | 489 | - | - | |
| Sed02g1557 | 490 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 432 | 441 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed02g1557 | 490 | PANTHER | CYTOCHROME P450 26 | 45 | 465 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Sed02g1557 | 490 | Pfam | Cytochrome P450 | 47 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1557 | 490 | Gene3D | Cytochrome P450 | 37 | 489 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1557 | 490 | PRINTS | E-class P450 group I signature | 397 | 421 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1557 | 490 | PRINTS | E-class P450 group I signature | 310 | 336 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1557 | 490 | PRINTS | E-class P450 group I signature | 429 | 439 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1557 | 490 | PRINTS | E-class P450 group I signature | 439 | 462 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1557 | 490 | PRINTS | P450 superfamily signature | 358 | 369 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1557 | 490 | PRINTS | P450 superfamily signature | 439 | 450 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1557 | 490 | PRINTS | P450 superfamily signature | 301 | 318 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1557 | 490 | PRINTS | P450 superfamily signature | 430 | 439 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1557 | 490 | FunFam | Ent-kaurenoic acid oxidase | 37 | 490 | - | - | |
| Sed02g1557 | 490 | SUPERFAMILY | Cytochrome P450 | 42 | 488 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g1557 | Sed-Chr2:51234556 | Sed04g2130 | Sed-Chr4:35471300 | 1.50E-189 | dispersed | |
| Sed02g1557 | Sed-Chr2:51234556 | Sed04g2129 | Sed-Chr4:35471300 | 1.80E-200 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g1557 | K04123 | - | csv:101221667 | 905.59 |