Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1571 ATGGCAGCAATTAAAAGCCTTTCATTTGTTGTTATTATTTTGCTTGTTTTTCCATCCGCCATTTTTGGTTACTCAGAAAATGAAGTGAAAAATTGGTGCAGCCAAACGCCGTATCCAGCCCCATGTGAGCATTTTCTCAAAACCAAATCCACCACTAAAAAAAAAAAATCCCCAATTTCCAATAAATCCCATTTCCTCAAAATCCTCGTCGAAACGGCACTCGAAACTGCCGTTTCGGCCCACCAAAACGCCCTCTCGCTCGGCCCGAAATGCCGAACCGCCAAAGAAAAAACCGCCTGGACCGACTGCGTCGACCTCTACAACCAAATCATAACCCGGCTCAACCGGACCACCGACCGCTGCTCCCAGACCGACGCGCAAACCTGGCTTAGCGCCTCCCTAACCGCCCTCGACACTTGCCGGACCGGGTTCGAGGAGCTCGGGGTTTCGGCTTTTGGGTACTCTTTGACGGCTAATAATGTATCGAAGTTGATTAGTGATGGGTTGTCGGTGAATAAACCGCCGTCGCCGAAGGGGTTTGCGCCGCCGCGCACGGAGGATGGGTTTCCGACGTGGGTGAGGCCCGGTGACCGGAAATTGCTGCAGTCGGCGGCGCCGAGTGCGGACGCGGTGGTGGCGAAGGATGGGTCTGGGGATTTTACGACGGTGAAGGCGGCGGTCGCCGCCGCGAAGGGCGGTGGTAGATTTGTAATTTACGTGAAGGCGGGGGTTTATAGTGAGAATGTTGAGATTAATGCTAAGAATGTTATGTTGATCGGCGATGGTATCGGAAAATCCGTCATCACAGGAAGTCGAAGTGTCGGCGGCGGCTCCACCACTTTTAGATCCGCCACCGTTGCCGTCGATGGAGATGCGTTCATCGCACGTGACATGACCTTCAGAAACACCGCCGGAGCGTCAAACCACCAGGCGGTGGCGCTCCGGTCAGGCTCCGACCTCTCCGTGTTCTACCGCTGCAGTTTCGAAGGCTTCCAAGACACGCTCTACGTCTACGCCGAACGCCAATTCTACAAGCAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTCATCCAGGACTGCAACATCATCGCCCGCGACCCGCCGAACAAGACCGTCACGATCACCGCCCAAGGCCGCTCCGATCCCAACCAGAACACCGGGATCTCGATCCACAATTGCCGAGTCACGTCGGCCGGCGGGAGCGGCGTCAAGGCCTATTTAGGGCGGCCGTGGAGGCAGTACTCGAGGACCGTGTTCATGAAATCGTCGATTGGGGGATTTATTAGCCCGGCGGGGTGGCTGGAGTGGAGCGGCAATTTTGCCCTAAATACTTTGTACTACGGCGAGTTTATGAACACCGGCGCCGGCGCTTCCACGGCGAATCGAGTCAAGTGGAAGGGTTACCGTGTGATTACCAGTGCGGCGGAGGCTTCGAAGTTCACCGCCGGGAATTTCATCGCTGGTGGATCTTGGTTGCCCGGTACCGGCGTCCCGTTCACTGCCGGTCTTTAA 1533 55.97 MAAIKSLSFVVIILLVFPSAIFGYSENEVKNWCSQTPYPAPCEHFLKTKSTTKKKKSPISNKSHFLKILVETALETAVSAHQNALSLGPKCRTAKEKTAWTDCVDLYNQIITRLNRTTDRCSQTDAQTWLSASLTALDTCRTGFEELGVSAFGYSLTANNVSKLISDGLSVNKPPSPKGFAPPRTEDGFPTWVRPGDRKLLQSAAPSADAVVAKDGSGDFTTVKAAVAAAKGGGRFVIYVKAGVYSENVEINAKNVMLIGDGIGKSVITGSRSVGGGSTTFRSATVAVDGDAFIARDMTFRNTAGASNHQAVALRSGSDLSVFYRCSFEGFQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDCNIIARDPPNKTVTITAQGRSDPNQNTGISIHNCRVTSAGGSGVKAYLGRPWRQYSRTVFMKSSIGGFISPAGWLEWSGNFALNTLYYGEFMNTGAGASTANRVKWKGYRVITSAAEASKFTAGNFIAGGSWLPGTGVPFTAGL 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51316048 51322001 - Sed0000048.1 Sed02g1571 705239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1571 510 Gene3D - 204 510 IPR012334 -
Sed02g1571 510 Pfam Pectinesterase 209 495 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed02g1571 510 Pfam Plant invertase/pectin methylesterase inhibitor 28 170 IPR006501 GO:0004857(InterPro)
Sed02g1571 510 SUPERFAMILY Pectin lyase-like 204 509 IPR011050 -
Sed02g1571 510 NCBIfam pectinesterase inhibitor domain 6 163 IPR006501 GO:0004857(InterPro)
Sed02g1571 510 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 173 IPR035513 -
Sed02g1571 510 SMART PMEI_2 24 171 IPR006501 GO:0004857(InterPro)
Sed02g1571 510 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Sed02g1571 510 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 172 IPR035513 -
Sed02g1571 510 FunFam Pectinesterase 203 510 - -
Sed02g1571 510 PANTHER PECTINESTERASE 5 500 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed02g1571 510 CDD PMEI-like_3 32 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1571 Sed-Chr2:51316048 Sed07g1118 Sed-Chr7:8229726 2.90E-148 dispersed
Sed01g0024 Sed-Chr1:357687 Sed02g1571 Sed-Chr2:51316048 2.50E-78 transposed
Sed01g3720 Sed-Chr1:66293453 Sed02g1571 Sed-Chr2:51316048 1.20E-165 transposed
Sed12g0271 Sed-Chr12:1549143 Sed02g1571 Sed-Chr2:51316048 1.70E-241 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1571 K01051 - csv:101217552 850.892