Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1587 ATGGAAGAGAGAGAGGCTATAAGTACAGGGGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTACCACGTGGCACCGAGAACGGAGAATCCGCCGCCGGCGAGCGGCGACGGTTCACCGGCCGTCGCTGCCTCGCCGGTCAGCGTGGGGCTGCCCGGCAGTGGAACCACAGGGAAGAAGAAGCGAGGCAGACCTAGAAAATACGGCCCGGATGGAATGGTCAACATGGCATTGTCGCCATTGCCGCTTTCTTCGTCGGCTCCGGCGGCCGGCGGTTTTTCCATCACCAAACGGGGGAAGAGCCGGCTGGGCGGCTCCGAGTTCAAGCATCTCAAGAAAATGGGAATGGATTATATAGGTGAATGGAACGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCAGGCGAGGATGTCACTATGAAGATCATCTCATTTTCTCAACAAGGTCCTCGAGCAATCTGCATTCTTTCTGCGAATGGAGTAATATCAAATGTCACTCTACGACAGCCCGATTCTTCAGGCGGTACTTTAACATATGAGGGTCGTTTTGAGATACTTTCTTTGTCTGGATCATTTACGCCGACTGACAACAATGGAGCAAGAGGCCGGTCGGGTGGGATGAGCGTCTCATTGGCAAGCCCTGACGGTCGTGTTGTCGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAGGCCCAGTACAGGTTGTGATTGGGAGTTTTCTACCAACTAGCCAACAAGAGCAGAAAGTTAAGAAACAGAAACCCGAGTCAGTACCAGCTGCAGCCCCTGTTGCGGTCCCGAGCACGACACCAGCTCCCTCCGTGCCAACTGCCAATGCTGATACAGATGACAGTTTAAACGGCAATGGCCTGCAAAATCCCGGGTCCTTAAAACCAACTACTTTTGCTCCTGCTGGTTTCCAGAGAGACAATTGGGGTGCCAACACTTCCGTGCATTCGATGCAGGAGCCAAGAAATACCGCTACCGACATCAATATATCGCTTCCGGGCTAA 1032 53.29 MEEREAISTGVTVIGAEAPSAYHVAPRTENPPPASGDGSPAVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGMVNMALSPLPLSSSAPAAGGFSITKRGKSRLGGSEFKHLKKMGMDYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFTPTDNNGARGRSGGMSVSLASPDGRVVGGGVAGLLIAAGPVQVVIGSFLPTSQQEQKVKKQKPESVPAAAPVAVPSTTPAPSVPTANADTDDSLNGNGLQNPGSLKPTTFAPAGFQRDNWGANTSVHSMQEPRNTATDINISLPG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51429520 51435201 - Sed0023301.1 Sed02g1587 705255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1587 343 MobiDBLite consensus disorder prediction 316 343 - -
Sed02g1587 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 293 IPR039605 GO:0003680(InterPro)
Sed02g1587 343 MobiDBLite consensus disorder prediction 277 305 - -
Sed02g1587 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 252 - -
Sed02g1587 343 CDD DUF296 133 246 IPR005175 -
Sed02g1587 343 Gene3D - 133 262 - -
Sed02g1587 343 ProSiteProfiles PPC domain profile profile. 128 268 IPR005175 -
Sed02g1587 343 FunFam AT-hook motif nuclear-localized protein 1-like 133 263 - -
Sed02g1587 343 MobiDBLite consensus disorder prediction 1 71 - -
Sed02g1587 343 MobiDBLite consensus disorder prediction 253 343 - -
Sed02g1587 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1587 Sed-Chr2:51429520 Sed05g0863 Sed-Chr5:6958647 2.20E-91 dispersed
Sed02g1587 Sed-Chr2:51429520 Sed02g1592 Sed-Chr2:51479887 2.50E-15 proximal
Sed12g0242 Sed-Chr12:1406829 Sed02g1587 Sed-Chr2:51429520 1.20E-140 wgd
Sed02g1587 Sed-Chr2:51429520 Sed04g2176 Sed-Chr4:35816589 5.90E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1587 - - - 0.0