Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1589 ATGAGCTCGAGACGGAGTGGTGGAGGTTGCACGGGAGGCAATGGTGGCAGCGGACCATGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTCATCCCGGGTGTATATTTGCACCTTACTTCGACTCCGAACAAGGCAAAGCACATTTTGCAGCCGTGCACAAGGTGTTCGGAGCCAGCAACGTGTCGAAGCTGCTTCTACATATTCCTGAACACAAGCGACTCGATGCTGCTATAACTATATGCTATGAGGCACAAGCTCGAATCAGAGAGCCCGTCTTTGGCTGTGTGGCTCATATCTTTGCTCTTCAACAACAGGCTGCGAGGTTGCGAGCAGAGCTCTCATACTTGCAAGCATACTTAGCAACATCTGAGCTTCCAAGATCAGCACCAAATCCACAGGTACAGCCACCAGCTCTGATCAAGCCATCTATGTCCTCAATTGTAAGCCTTCCATCAACATGCCTTTCCTCACCCACCGTGTCAGATCTTTCGCTACTGCTCGATCCCGTGGAGCAAGCTTCAGAGGCAAAATTGTCGTCTCCATTGGATCTATATCAAATTGGAAGCAACAATTTCCCATCCATGGATATTAGGGATCAAGAGCTCATCCTAAAACAACTGTCCTCGATGCAATGCATTGGTGCCTCGCTATTTCCGTACCTCCATAAACACGCCTAA 678 49.71 MSSRRSGGGCTGGNGGSGPCGACKFLRRKCHPGCIFAPYFDSEQGKAHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARIREPVFGCVAHIFALQQQAARLRAELSYLQAYLATSELPRSAPNPQVQPPALIKPSMSSIVSLPSTCLSSPTVSDLSLLLDPVEQASEAKLSSPLDLYQIGSNNFPSMDIRDQELILKQLSSMQCIGASLFPYLHKHA 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51458567 51459394 + Sed0004361.1 Sed02g1589 705257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1589 225 PANTHER LOB DOMAIN CONTAINING PROTEIN 16 138 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Sed02g1589 225 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Sed02g1589 225 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1589 Sed-Chr2:51458567 Sed04g2174 Sed-Chr4:35791561 5.50E-51 dispersed
Sed07g2503 Sed-Chr7:40762582 Sed02g1589 Sed-Chr2:51458567 1.80E-32 transposed
Sed02g1589 Sed-Chr2:51458567 Sed09g0109 Sed-Chr9:822546 3.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37653 PF03195 LOB 1.30E-36 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1589 K21994 - csv:101216934 328.946