Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1589 | ATGAGCTCGAGACGGAGTGGTGGAGGTTGCACGGGAGGCAATGGTGGCAGCGGACCATGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTCATCCCGGGTGTATATTTGCACCTTACTTCGACTCCGAACAAGGCAAAGCACATTTTGCAGCCGTGCACAAGGTGTTCGGAGCCAGCAACGTGTCGAAGCTGCTTCTACATATTCCTGAACACAAGCGACTCGATGCTGCTATAACTATATGCTATGAGGCACAAGCTCGAATCAGAGAGCCCGTCTTTGGCTGTGTGGCTCATATCTTTGCTCTTCAACAACAGGCTGCGAGGTTGCGAGCAGAGCTCTCATACTTGCAAGCATACTTAGCAACATCTGAGCTTCCAAGATCAGCACCAAATCCACAGGTACAGCCACCAGCTCTGATCAAGCCATCTATGTCCTCAATTGTAAGCCTTCCATCAACATGCCTTTCCTCACCCACCGTGTCAGATCTTTCGCTACTGCTCGATCCCGTGGAGCAAGCTTCAGAGGCAAAATTGTCGTCTCCATTGGATCTATATCAAATTGGAAGCAACAATTTCCCATCCATGGATATTAGGGATCAAGAGCTCATCCTAAAACAACTGTCCTCGATGCAATGCATTGGTGCCTCGCTATTTCCGTACCTCCATAAACACGCCTAA | 678 | 49.71 | MSSRRSGGGCTGGNGGSGPCGACKFLRRKCHPGCIFAPYFDSEQGKAHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARIREPVFGCVAHIFALQQQAARLRAELSYLQAYLATSELPRSAPNPQVQPPALIKPSMSSIVSLPSTCLSSPTVSDLSLLLDPVEQASEAKLSSPLDLYQIGSNNFPSMDIRDQELILKQLSSMQCIGASLFPYLHKHA | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 51458567 | 51459394 | + | Sed0004361.1 | Sed02g1589 | 705257 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1589 | 225 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 16 | 138 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Sed02g1589 | 225 | Pfam | Lateral organ boundaries (LOB) domain | 19 | 117 | IPR004883 | - | |
Sed02g1589 | 225 | ProSiteProfiles | LOB domain profile. | 18 | 120 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1589 | Sed-Chr2:51458567 | Sed04g2174 | Sed-Chr4:35791561 | 5.50E-51 | dispersed | |
Sed07g2503 | Sed-Chr7:40762582 | Sed02g1589 | Sed-Chr2:51458567 | 1.80E-32 | transposed | |
Sed02g1589 | Sed-Chr2:51458567 | Sed09g0109 | Sed-Chr9:822546 | 3.80E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37653 | PF03195 | LOB | 1.30E-36 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1589 | K21994 | - | csv:101216934 | 328.946 |