Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1592 ATGGATCGAGCCACCGCCGCCCGTGGCCGCTCGCTTCCGCCGCCGTTCATTTCAAGCGACCTCCATCTCAATCCCCACCACCATTTCCTCCATCAGAACTCCGATCAACAACACGACGGAGGCGCCGCCGCAGACGGCGAGGTCTCGAGACGGCCACGTGGCCGACCGGCCGGGTCGAAGAACAAACCGAAACCGCCGATGATAATCACACGCGACAGCGCCAACGCACTTCGGTGCCACGTCATCGAAATCGCCAACGCCAATGACGTGATCGAAACCCTCACGACTTTCGCACGCCAGCGCCAGCGTGGCATTTGCATCCTGACCGGCGCCGGAGCGGTCACCAACGTTAACCTCAAGCAGCCCGCAGCCGCCGTCGCCAGAGCGGTGGTCTCTATGCCCGGAAGGTTCGAGATTCTCTCGCTGTCCGGGTCGTTTCTGCCGCCGCCTGCCCCACGGGCGGCGTCCGGGCTGACCGTGTATTTGTCGGGCGGGCAGGGGCAGGTGGTTGGGGGCAGCGTGGTGGGCCCACTTCTGAGCTCTGGACCGGTGGTGATTACGGCGGCTCTATTCGGAAACGCTGCGTATGAGAGGCTGCCGATGGAGGAGGAGGATGATGATGTGGCGGCGGAGACCACGACGGAAGCCGGAATTAGTCCGATTAGGTCGCCGGAAACTGCTTTGCAACAGCAACAGCTTTTGTCGGGACTTCATGGATTGGCGCCGAATCTAATGAACACGTGTCAACTGCCGACGGAGCCCTATTGGGACACAGGTCGTACTCCGCCATTTTAG 795 62.01 MDRATAARGRSLPPPFISSDLHLNPHHHFLHQNSDQQHDGGAAADGEVSRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTTFARQRQRGICILTGAGAVTNVNLKQPAAAVARAVVSMPGRFEILSLSGSFLPPPAPRAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAALFGNAAYERLPMEEEDDDVAAETTTEAGISPIRSPETALQQQQLLSGLHGLAPNLMNTCQLPTEPYWDTGRTPPF 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51479887 51480913 + Sed0000733.1 Sed02g1592 705260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1592 264 FunFam AT-hook motif nuclear-localized protein 77 207 - -
Sed02g1592 264 MobiDBLite consensus disorder prediction 1 68 - -
Sed02g1592 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 191 IPR005175 -
Sed02g1592 264 CDD DUF296 78 162 IPR005175 -
Sed02g1592 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 205 - -
Sed02g1592 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 216 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Sed02g1592 264 PIRSF ESCAROLA 10 255 IPR014476 GO:0003680(InterPro)
Sed02g1592 264 ProSiteProfiles PPC domain profile profile. 74 216 IPR005175 -
Sed02g1592 264 Gene3D - 77 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3955 Sed-Chr1:68666267 Sed02g1592 Sed-Chr2:51479887 1.10E-69 dispersed
Sed02g1592 Sed-Chr2:51479887 Sed05g0860 Sed-Chr5:6877873 1.40E-66 dispersed
Sed02g1587 Sed-Chr2:51429520 Sed02g1592 Sed-Chr2:51479887 2.50E-15 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1592 - - - 0.0