Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1604 ATGGCGTGGCCGAATCAAGAATCGGTCGAAACCTTCATGAGAATCACCGGCGCTTCCGAGTCCATCGCCTTGCGCAAGCTCGAGGAATATAGAGGCAATCTCAATGCAGCGGTCAATTCTCATTTCAGTGAAGGGTACAGATTCAACCAATATGTTGCTACCACCTTCCCAGAGCAGAACTACACAAATGCAAATGGTGGGATTCAAGGCGGACAATATGGGCTCTTGCCACTTCTTAATGCTGCCAGAAGTTTCAGGCCATCAAACCTTCTTGATCCCAATTATAGAAGACAATTTTTTGACCAGATGCGTGGATATCCATCAGTTGGCAGTCCATCTTTTAATTCACATTTACAACCAGGAAATATGGGGCCAGTTCCTTCAGGGTTCAATTCCTTTCCTGCTCAACCATCTCATCAAGCATGGAGAGGTACCTTTGAAGATGAAAATTACACTTCATCTAGTAATCAGAATACAGAGAACAATACTGAGGAGGAAATGCTAAGAGCTGCTATTGAGGCTTCAAAACACACTTCATCATCCAGTAATCAGAAAACAGAGAACGATACTGAGGATGAAATGCTTAGAGCTGCTATCGAGGCTTCGAAACTGGATTCTGATCTCGAGCTGTTACAAAGACAACTTCAGCGAGAGGAAGATGATCTTGATCATGCAGTTTCATTGTCGTTGGGGATAGCCAAGCAAGAGAAAGCAGTCCGTGAGCTGATGCTGGAGAACAAAGATGAATATTCTAGCATAGAGAGGGGAGAACCTAGCAACAGTGGACCAAAGGAGTGCAGAGGGAGCACTAGTACTCATCACCAGCATGAACAAGATGCTTCCCATCGTAATGAGTGGGGTAGCATCACTTCCAAGGAGTTGAGTGAATCAGTATTGCTTGAAGCTGCCCTTTTTGGGGGAGGTTCTAAAGACTTCTCAGAGAACCCCCTGTGGGCATCTCATTTGCAAAATGTTAAAATTCAAGGCACGAATAAGGGCAGTGATCTGCAACCTGTACCATCTTCATCAGCACAGCAGTCACATCAGCAACAACAGGACACAGGAAGGAATTTAGCTGCTCAGGGAACTCCATTTCCTCCAGAACCAGAAATAAATAATAAAGATTCAGTAACCCTTCTTCTTCGAATGCCAGATGGATGTCGCCATGAGCGCCGGTTTCTTAATTCTGATAAGCTTCAGCTCCTTTTCAACTTCATTGATGACAAATTGGCTATGAAGCCTGGCACATATAAAGTGACAAGGCCATATCCCAGGCGTGCATTCGGAGTTGAAGATGGCTCGATGACGTTGAGAGATCTCGGCCTTACTGGCAAGCAAGAAGCCTTGGTTGTGGAGTTCATATAA 1365 44.91 MAWPNQESVETFMRITGASESIALRKLEEYRGNLNAAVNSHFSEGYRFNQYVATTFPEQNYTNANGGIQGGQYGLLPLLNAARSFRPSNLLDPNYRRQFFDQMRGYPSVGSPSFNSHLQPGNMGPVPSGFNSFPAQPSHQAWRGTFEDENYTSSSNQNTENNTEEEMLRAAIEASKHTSSSSNQKTENDTEDEMLRAAIEASKLDSDLELLQRQLQREEDDLDHAVSLSLGIAKQEKAVRELMLENKDEYSSIERGEPSNSGPKECRGSTSTHHQHEQDASHRNEWGSITSKELSESVLLEAALFGGGSKDFSENPLWASHLQNVKIQGTNKGSDLQPVPSSSAQQSHQQQQDTGRNLAAQGTPFPPEPEINNKDSVTLLLRMPDGCRHERRFLNSDKLQLLFNFIDDKLAMKPGTYKVTRPYPRRAFGVEDGSMTLRDLGLTGKQEALVVEFI 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51539741 51544496 + Sed0012052.1 Sed02g1604 705272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1604 454 CDD UBX 378 452 - -
Sed02g1604 454 SMART ubx_3 369 453 IPR001012 GO:0005515(InterPro)
Sed02g1604 454 Pfam UBA-like domain 6 45 - -
Sed02g1604 454 Pfam Ubiquitin interaction motif 163 177 IPR003903 -
Sed02g1604 454 Pfam Ubiquitin interaction motif 190 202 IPR003903 -
Sed02g1604 454 CDD UBA_Ubx1_like 6 42 - -
Sed02g1604 454 MobiDBLite consensus disorder prediction 330 359 - -
Sed02g1604 454 Pfam UBX domain 373 452 IPR001012 GO:0005515(InterPro)
Sed02g1604 454 Coils Coil 201 228 - -
Sed02g1604 454 MobiDBLite consensus disorder prediction 173 192 - -
Sed02g1604 454 Gene3D - 4 45 - -
Sed02g1604 454 MobiDBLite consensus disorder prediction 269 283 - -
Sed02g1604 454 MobiDBLite consensus disorder prediction 330 373 - -
Sed02g1604 454 SMART uim 217 236 IPR003903 -
Sed02g1604 454 SMART uim 163 182 IPR003903 -
Sed02g1604 454 SMART uim 190 209 IPR003903 -
Sed02g1604 454 SUPERFAMILY UBA-like 4 43 IPR009060 GO:0005515(InterPro)
Sed02g1604 454 Gene3D - 374 453 - -
Sed02g1604 454 ProSiteProfiles UBX domain profile. 372 450 IPR001012 GO:0005515(InterPro)
Sed02g1604 454 PANTHER FAS-ASSOCIATED PROTEIN 188 452 IPR050730 GO:0005783(PANTHER)|GO:0030433(PANTHER)|GO:0043130(PANTHER)
Sed02g1604 454 MobiDBLite consensus disorder prediction 249 286 - -
Sed02g1604 454 SUPERFAMILY Ubiquitin-like 348 447 IPR029071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1604 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1604 Sed-Chr2:51539741 Sed03g1318 Sed-Chr3:8442357 2.80E-09 dispersed
Sed02g1604 Sed-Chr2:51539741 Sed08g2861 Sed-Chr8:39816690 1.30E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013289 0 1 0 0 0 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 25