Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1617 ATGGCGAGAGGAAAAACACAGATGAGGCGAATCGAGAACGCGACGAGCCGGCAAGTAACGTTTTCGAAACGGCATAATGGGCTGCTCAAGAAGGCGTTTGAGCTCTCCGTTCTCTGTGAAGCTGACGTGGCTCTCATCATTTTCTCTTCTAGAGGAAAGCTTCATGAATTTGCAAGCTCAAGCATGCAGGCTATAGTGGGGCGATATCTAAGGCATACAAAGGAAAACTGTAATCTTCAACGTCTTTCACCACATCACCATAATTTACAAGCTGAGATGAAGGATGAGGCTGCAAGTTTGTTGAAAGAGATAGAGTCACTTGAAATTTCAAAGAGGAAATTGTTGGGAGAAGATTTGGGGTCAAGCTCTTATGAAGAACTTCAACAAATAGAACACCAGCTAGAAAAGAGCTTAACCCATGTTAGAGCTAAAAAGCATGAGGTTTACAAGGAAAAGATTGAACAACTAACCGAAAAGGAGAGGTATTTGGCAGCTGAAAATGCAAAGCTAACTAATAAGTATTTGGTTCAAAATAAACCTCAACGATCACCAACTCAATTAGGAGAAATTTCGCCTAATTTAGAAACCAGCTCGACCTCGGACGTCGAAACAGATTTGTTCATTGGATTGCCCAAGTCAGGATCATAG 648 41.82 MARGKTQMRRIENATSRQVTFSKRHNGLLKKAFELSVLCEADVALIIFSSRGKLHEFASSSMQAIVGRYLRHTKENCNLQRLSPHHHNLQAEMKDEAASLLKEIESLEISKRKLLGEDLGSSSYEELQQIEHQLEKSLTHVRAKKHEVYKEKIEQLTEKERYLAAENAKLTNKYLVQNKPQRSPTQLGEISPNLETSSTSDVETDLFIGLPKSGS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51615464 51621769 + Sed0009751.6 Sed02g1617 705285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1617 215 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed02g1617 215 SUPERFAMILY SRF-like 3 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1617 215 MobiDBLite consensus disorder prediction 175 215 - -
Sed02g1617 215 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1617 215 Coils Coil 90 117 - -
Sed02g1617 215 Pfam K-box region 86 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed02g1617 215 ProSiteProfiles K-box domain profile. 90 182 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed02g1617 215 Gene3D - 14 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1617 215 MobiDBLite consensus disorder prediction 175 204 - -
Sed02g1617 215 Coils Coil 153 173 - -
Sed02g1617 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1617 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1617 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1617 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1617 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 182 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed02g1617 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1617 215 FunFam MADS-box transcription factor MADS-MC 13 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1617 Sed-Chr2:51615464 Sed02g1621 Sed-Chr2:51615803 7.00E-112 dispersed
Sed10g0016 Sed-Chr10:71317 Sed02g1617 Sed-Chr2:51615464 4.30E-26 dispersed
Sed02g1617 Sed-Chr2:51615464 Sed02g1618 Sed-Chr2:51615803 7.00E-112 tandem
Sed12g0222 Sed-Chr12:1232327 Sed02g1617 Sed-Chr2:51615464 4.10E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37656 PF01486 K-box 2.90E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1617 - - - 0.0