Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1618 | ATGGCGAGAGGAAAAACACAGATGAGGCGAATCGAGAACGCGACGAGCCGGCAAGTAACGTTTTCGAAACGGCATAATGGGCTGCTCAAGAAGGCGTTTGAGCTCTCCGTTCTCTGTGAAGCTGACGTGGCTCTCATCATTTTCTCTTCTAGAGGAAAGCTTCATGAATTTGCAAGCTCAAGCATGCAGGCTATAGTGGGGCGATATCTAAGGCATACAAAGGAAAACTGTAATCTTCAACGTCTTTCACCACATCACCATAATTTACAAGCTGAGATGAAGGATGAGGCTGCAAGTTTGTTGAAAGAGATAGAGTCACTTGAAATTTCAAAGAGGAAATTGTTGGGAGAAGATTTGGGGTCAAGCTCTTATGAAGAACTTCAACAAATAGAACACCAGCTAGAAAAGAGCTTAACCCATGTTAGAGCTAAAAAGCATGAGGTTTACAAGGAAAAGATTGAACAACTAACCGAAAAGGAGAGGTATTTGGCAGCTGAAAATGCAAAGCTAACTAATAAGTATTTGGTTCAAAATAAACCTCAACGATCACCAACTCAATTAGGAGAAATTTCGCCTAATTTAGAAACCAGCTCGACCTCGGACGTCGAAACAGATTTGTTCATTGGATTGCCCAAGTCAGGATCATAG | 648 | 41.82 | MARGKTQMRRIENATSRQVTFSKRHNGLLKKAFELSVLCEADVALIIFSSRGKLHEFASSSMQAIVGRYLRHTKENCNLQRLSPHHHNLQAEMKDEAASLLKEIESLEISKRKLLGEDLGSSSYEELQQIEHQLEKSLTHVRAKKHEVYKEKIEQLTEKERYLAAENAKLTNKYLVQNKPQRSPTQLGEISPNLETSSTSDVETDLFIGLPKSGS | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 51615803 | 51621769 | + | Sed0009751.1 | Sed02g1618 | 705286 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1618 | 215 | CDD | MADS_MEF2_like | 2 | 74 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed02g1618 | 215 | SUPERFAMILY | SRF-like | 3 | 90 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1618 | 215 | MobiDBLite | consensus disorder prediction | 175 | 215 | - | - | |
Sed02g1618 | 215 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1618 | 215 | Coils | Coil | 90 | 117 | - | - | |
Sed02g1618 | 215 | Pfam | K-box region | 86 | 173 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed02g1618 | 215 | ProSiteProfiles | K-box domain profile. | 90 | 182 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed02g1618 | 215 | Gene3D | - | 14 | 94 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1618 | 215 | MobiDBLite | consensus disorder prediction | 175 | 204 | - | - | |
Sed02g1618 | 215 | Coils | Coil | 153 | 173 | - | - | |
Sed02g1618 | 215 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1618 | 215 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1618 | 215 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1618 | 215 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1618 | 215 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 182 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed02g1618 | 215 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1618 | 215 | FunFam | MADS-box transcription factor MADS-MC | 13 | 84 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1618 | Sed-Chr2:51615803 | Sed02g1621 | Sed-Chr2:51615803 | 7.00E-112 | dispersed | |
Sed02g1617 | Sed-Chr2:51615464 | Sed02g1618 | Sed-Chr2:51615803 | 7.00E-112 | tandem | |
Sed02g1618 | Sed-Chr2:51615803 | Sed02g1619 | Sed-Chr2:51615803 | 1.10E-80 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37657 | PF01486 | K-box | 2.90E-25 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1618 | - | - | - | 0.0 |