Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1622 | ATGGCGAGAGGAAAAACACAGATGAGGCGAATCGAGAACGCGACGAGCCGGCAAGTAACGTTTTCGAAACGGCATAATGGGCTGCTCAAGAAGGCGTTTGAGCTCTCCGTTCTCTGTGAAGCTGACGTGGCTCTCATCATTTTCTCTTCTAGAGGAAAGCTTCATGAATTTGCAAGCTCAAGCATGCAGGCTATAGTGGGGCGATATCTAAGGCATACAAAGGAAAACTGTAATCTTCAACGTCTTTCACCACATCACCATAATTTACAAGCTGAGATGAAGGATGAGGCTGCAAGTTTGTTGAAAGAGATAGAGTCACTTGAAATTTCAAAGAGGAAATTGTTGGGAGAAGATTTGGGGTCAAGCTCTTATGAAGAACTTCAACAAATAGAACACCAGCTAGAAAAGAGCTTAACCCATGTTAGAGCTAAAAAGGTAAAGTATATGAGATGGTATTTACATCTATCTCAAAATCAAGTGATGAGAAGAGCAACTGTGGGTCACTAA | 507 | 42.01 | MARGKTQMRRIENATSRQVTFSKRHNGLLKKAFELSVLCEADVALIIFSSRGKLHEFASSSMQAIVGRYLRHTKENCNLQRLSPHHHNLQAEMKDEAASLLKEIESLEISKRKLLGEDLGSSSYEELQQIEHQLEKSLTHVRAKKVKYMRWYLHLSQNQVMRRATVGH | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 51615803 | 51620636 | + | Sed0009751.5 | Sed02g1622 | 705290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1622 | 168 | Pfam | K-box region | 86 | 152 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed02g1622 | 168 | CDD | MADS_MEF2_like | 2 | 74 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed02g1622 | 168 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1622 | 168 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1622 | 168 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1622 | 168 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1622 | 168 | FunFam | MADS-box transcription factor MADS-MC | 13 | 84 | - | - | |
Sed02g1622 | 168 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1622 | 168 | ProSiteProfiles | K-box domain profile. | 90 | 168 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed02g1622 | 168 | Gene3D | - | 13 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1622 | 168 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed02g1622 | 168 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 159 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed02g1622 | 168 | Coils | Coil | 90 | 117 | - | - | |
Sed02g1622 | 168 | SUPERFAMILY | SRF-like | 3 | 90 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1620 | Sed-Chr2:51615803 | Sed02g1622 | Sed-Chr2:51615803 | 1.70E-75 | dispersed | |
Sed02g1622 | Sed-Chr2:51615803 | Sed12g0223 | Sed-Chr12:1232327 | 8.80E-54 | dispersed | |
Sed02g1621 | Sed-Chr2:51615803 | Sed02g1622 | Sed-Chr2:51615803 | 2.20E-73 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37661 | PF01486 | K-box | 6.00E-18 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1622 | - | - | - | 0.0 |