Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1622 ATGGCGAGAGGAAAAACACAGATGAGGCGAATCGAGAACGCGACGAGCCGGCAAGTAACGTTTTCGAAACGGCATAATGGGCTGCTCAAGAAGGCGTTTGAGCTCTCCGTTCTCTGTGAAGCTGACGTGGCTCTCATCATTTTCTCTTCTAGAGGAAAGCTTCATGAATTTGCAAGCTCAAGCATGCAGGCTATAGTGGGGCGATATCTAAGGCATACAAAGGAAAACTGTAATCTTCAACGTCTTTCACCACATCACCATAATTTACAAGCTGAGATGAAGGATGAGGCTGCAAGTTTGTTGAAAGAGATAGAGTCACTTGAAATTTCAAAGAGGAAATTGTTGGGAGAAGATTTGGGGTCAAGCTCTTATGAAGAACTTCAACAAATAGAACACCAGCTAGAAAAGAGCTTAACCCATGTTAGAGCTAAAAAGGTAAAGTATATGAGATGGTATTTACATCTATCTCAAAATCAAGTGATGAGAAGAGCAACTGTGGGTCACTAA 507 42.01 MARGKTQMRRIENATSRQVTFSKRHNGLLKKAFELSVLCEADVALIIFSSRGKLHEFASSSMQAIVGRYLRHTKENCNLQRLSPHHHNLQAEMKDEAASLLKEIESLEISKRKLLGEDLGSSSYEELQQIEHQLEKSLTHVRAKKVKYMRWYLHLSQNQVMRRATVGH 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51615803 51620636 + Sed0009751.5 Sed02g1622 705290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1622 168 Pfam K-box region 86 152 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed02g1622 168 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed02g1622 168 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1622 168 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1622 168 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1622 168 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1622 168 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Sed02g1622 168 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1622 168 ProSiteProfiles K-box domain profile. 90 168 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed02g1622 168 Gene3D - 13 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1622 168 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed02g1622 168 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 159 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed02g1622 168 Coils Coil 90 117 - -
Sed02g1622 168 SUPERFAMILY SRF-like 3 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1620 Sed-Chr2:51615803 Sed02g1622 Sed-Chr2:51615803 1.70E-75 dispersed
Sed02g1622 Sed-Chr2:51615803 Sed12g0223 Sed-Chr12:1232327 8.80E-54 dispersed
Sed02g1621 Sed-Chr2:51615803 Sed02g1622 Sed-Chr2:51615803 2.20E-73 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37661 PF01486 K-box 6.00E-18 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1622 - - - 0.0