Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1629 ATGGAAATCCCAACCATCTCCACCGCCATTTCCCTCACTCTATTCACCGCCGCCCTCATCCTCCTCCCCTTCGCGATCCTCCTCCTCCGAACCATCGCCGGAAAATCCCTAACGAATCCGGACTACGCGCCGGTGTACGGCACGACGTACGGCCAGATCCGGTACTTCCGCAGCCTCTTCGACCACCTCACCGCGGTGGCGAAGCGGCGGAGAACGTTCCGGCTGATCGGAGCGGCGTACAGCGAGATCTACACGGTGGATCCGAGGAACGTGGAGCACGTGCTGAGGACGCGGTTCGCGGATTACGCGAAGGGAAGCAAGGATCGAGAGATCGCCGGAGATCTGCTCGGAGAGGGGATTTTCGCGGCGGACGGAGAGAAGTGGAAGCGGCAGAGGAAATTGGCGAGCTACGAGTTCTCGAGTAGGGTTCTTAGGGATTTTAGTTGCTCTGTTTTTAGACGAAATGCTCGGAAACTTCTTCGCCTTCTTTCCGGGTTCTCCGCCTCGGGTCGGGTTTTCGATATCCAGGATTTGGTAATGCGAAGCTCATTGGATTCCATTTTCAAAGTTGGGTTCGGCGTGGATTTAAACTGCTTGGATGAACCAAGCAACGCAGGGAGCGGGTTCATGAACGCCTTCGACGATTCCAGCGCTCAAATCTTTTGGCGATACATCGATCCTTTCTGGAAATTGAAAAGATTTCTCAACATCGGCTCCGAAGCATCGTTTAGGAACAATCTCAAAATCGTCAATGCTTTTGTGCACCGGTTGATCGCGGACAGGAGAAATCTGCTTCACCAACCTAATCTCAAGAATGAGAAAGAGGACATACTTTCAAGGTTTCTAGTGGAAAGTGAGAAGGATCCAACAGGAAAGAATGATGAATATCTGAGAGATATAGTTCTGAATTTCATGTTGGCTGGCAAGGATACAACTGCAGGAACTCTGTCTTGGTTCTTCTACATGTTATGCAAAAACCCTTTAATACAGGAAAAAGTTGCAGAAGAAATCAGCCAAATTGTTGGGGTTCAAGGGCAAGAATTTGACATAAATTTGTTGACTGATTCAACTCTTGACAAAATGCATTATCTTCATGCAGCATTGGCTGAGACTTTAAGGCTCTATCCTGCAGTTCCTGTGGATGGAAGGACTGCAGAAATAGATGACATTCTTCCTGATGGCTATAAACTAAGAAAAGGAGATGGAGTGTACTACATGGCCTATTCCATGGGCAGGATGCCCTTCCTTTGGGGAGAAGATGCTGAAGATTTTAAACCCGAGAGATGGCTCAAAAATGGAACTTTTCGACCCGAGTCGCCTTTCAAATTCATTGCATTTCACGCGGGTCCTCGAATGTGTTTGGGCAAGGACTTTGCTTATCGACAAATGAAGATAGTATCGGCTGCTCTTCTTCAATCTTTTCGATTCAAATTAGCCGATCCGATGAGAAATACAATAATCAAAATAGATGAAACGGTGCGTTTGACACGGTATAAGAATTCAAATTCATTTCCCTCGCATTTCCGCCCAACGTCCCCAAATTTCTTGCGATCGGAGTTCGACGGTGCCGGACTGATGAAATCTCCGGCGACGGACGAAAACGAAGCTCCGAAGCGGCAATGGTCCCTGCGAGACTTCGACGTAGGAAAGCCTCTCGGCCGTGGAAAATTCGGAAGAGTTTATCTGGCTAGAGAACTCAAGAGCAAGCACATAGTGGCACTGAAGGTGATTTTCAAGGAGCAGATGGAGAAGTACAGAATTCATCATCAGTTAAGGCGAGAGATGGAAATCCAGACCCGTCTTCAGCACCCGAACGTGCTGCGCCTTTACGGATGGTTTCATGATGCTGAACGGATTTTCTTGATATTGGAATACGCTCACCGCGGTGAGCTTTATAGGGAGCTTAGGAAAAGTGGTCATCTCAACGAGAAGCAAGCTGCAACATACATTTTAAGCCTCACACAAGCACTGGCATATTGTCATGAGAAGCATGTGATTCACAGGGACATTAAGCCAGAAAATTTGCTCCTTGATCATGAGGGTCGGTTGAAAATTGCAGATTTTGGATGGTCAGTACAGTCAAGAAGCAAGAGACATACAATGTGTGGAACTTTAGATTACTTAGCCCCAGAAATGGTAGAGAATAAAGCTCATGACTATTCAGTAGATAATTGGACTTTGGGCATCCTTTGCTATGAGTTCCTTTATGGAGTGCCTCCATTTGAAGCTGAAACTCAATGTGACACTTTTGAAAGGATAATGAAGGTTGACTTAAACTTTCCTTTGACCCCTCGTGTCTCTACAGAAGCAAAAGATCTGATTGGCCTGCTTTTGGTGAGGGATTCCTCTAAAAGACTTTCACTTCAGAAGATTGTGCAGCATCCCTGGATAATCAAGAATGCAGATCCTAATGGTATTTGCAATAGTAAGCAGAAACATTAA 2442 46.6 MEIPTISTAISLTLFTAALILLPFAILLLRTIAGKSLTNPDYAPVYGTTYGQIRYFRSLFDHLTAVAKRRRTFRLIGAAYSEIYTVDPRNVEHVLRTRFADYAKGSKDREIAGDLLGEGIFAADGEKWKRQRKLASYEFSSRVLRDFSCSVFRRNARKLLRLLSGFSASGRVFDIQDLVMRSSLDSIFKVGFGVDLNCLDEPSNAGSGFMNAFDDSSAQIFWRYIDPFWKLKRFLNIGSEASFRNNLKIVNAFVHRLIADRRNLLHQPNLKNEKEDILSRFLVESEKDPTGKNDEYLRDIVLNFMLAGKDTTAGTLSWFFYMLCKNPLIQEKVAEEISQIVGVQGQEFDINLLTDSTLDKMHYLHAALAETLRLYPAVPVDGRTAEIDDILPDGYKLRKGDGVYYMAYSMGRMPFLWGEDAEDFKPERWLKNGTFRPESPFKFIAFHAGPRMCLGKDFAYRQMKIVSAALLQSFRFKLADPMRNTIIKIDETVRLTRYKNSNSFPSHFRPTSPNFLRSEFDGAGLMKSPATDENEAPKRQWSLRDFDVGKPLGRGKFGRVYLARELKSKHIVALKVIFKEQMEKYRIHHQLRREMEIQTRLQHPNVLRLYGWFHDAERIFLILEYAHRGELYRELRKSGHLNEKQAATYILSLTQALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYSVDNWTLGILCYEFLYGVPPFEAETQCDTFERIMKVDLNFPLTPRVSTEAKDLIGLLLVRDSSKRLSLQKIVQHPWIIKNADPNGICNSKQKH 813
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 51674549 51688784 + Sed0020383.1 Sed02g1629 705297
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1629 813 Gene3D Cytochrome P450 40 505 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 FunFam Serine/threonine-protein kinase ark1 538 811 - -
Sed02g1629 813 Gene3D Phosphorylase Kinase; domain 1 534 629 - -
Sed02g1629 813 ProSiteProfiles Protein kinase domain profile. 546 797 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1629 813 ProSitePatterns Protein kinases ATP-binding region signature. 552 579 IPR017441 GO:0005524(InterPro)
Sed02g1629 813 SUPERFAMILY Cytochrome P450 41 498 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 SMART serkin_6 546 797 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1629 813 Pfam Cytochrome P450 57 480 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 SUPERFAMILY Protein kinase-like (PK-like) 537 801 IPR011009 -
Sed02g1629 813 CDD CYP86A 71 481 - -
Sed02g1629 813 CDD STKc_Aurora 545 797 - -
Sed02g1629 813 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed02g1629 813 Gene3D Transferase(Phosphotransferase) domain 1 630 813 - -
Sed02g1629 813 PANTHER CYTOCHROME P450 25 481 - -
Sed02g1629 813 FunFam Aurora kinase A 538 629 - -
Sed02g1629 813 Pfam Protein kinase domain 547 797 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1629 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1629 813 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1629 Sed-Chr2:51674549 Sed12g1382 Sed-Chr12:11066301 2.00E-106 dispersed
Sed02g1627 Sed-Chr2:51642719 Sed02g1629 Sed-Chr2:51674549 7.00E-87 proximal
Sed12g0231 Sed-Chr12:1311267 Sed02g1629 Sed-Chr2:51674549 1.70E-157 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78829 PF00067 p450 7.50E-74 No_clan Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1629 - - - 0.0