Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed02g1629 | ATGGAAATCCCAACCATCTCCACCGCCATTTCCCTCACTCTATTCACCGCCGCCCTCATCCTCCTCCCCTTCGCGATCCTCCTCCTCCGAACCATCGCCGGAAAATCCCTAACGAATCCGGACTACGCGCCGGTGTACGGCACGACGTACGGCCAGATCCGGTACTTCCGCAGCCTCTTCGACCACCTCACCGCGGTGGCGAAGCGGCGGAGAACGTTCCGGCTGATCGGAGCGGCGTACAGCGAGATCTACACGGTGGATCCGAGGAACGTGGAGCACGTGCTGAGGACGCGGTTCGCGGATTACGCGAAGGGAAGCAAGGATCGAGAGATCGCCGGAGATCTGCTCGGAGAGGGGATTTTCGCGGCGGACGGAGAGAAGTGGAAGCGGCAGAGGAAATTGGCGAGCTACGAGTTCTCGAGTAGGGTTCTTAGGGATTTTAGTTGCTCTGTTTTTAGACGAAATGCTCGGAAACTTCTTCGCCTTCTTTCCGGGTTCTCCGCCTCGGGTCGGGTTTTCGATATCCAGGATTTGGTAATGCGAAGCTCATTGGATTCCATTTTCAAAGTTGGGTTCGGCGTGGATTTAAACTGCTTGGATGAACCAAGCAACGCAGGGAGCGGGTTCATGAACGCCTTCGACGATTCCAGCGCTCAAATCTTTTGGCGATACATCGATCCTTTCTGGAAATTGAAAAGATTTCTCAACATCGGCTCCGAAGCATCGTTTAGGAACAATCTCAAAATCGTCAATGCTTTTGTGCACCGGTTGATCGCGGACAGGAGAAATCTGCTTCACCAACCTAATCTCAAGAATGAGAAAGAGGACATACTTTCAAGGTTTCTAGTGGAAAGTGAGAAGGATCCAACAGGAAAGAATGATGAATATCTGAGAGATATAGTTCTGAATTTCATGTTGGCTGGCAAGGATACAACTGCAGGAACTCTGTCTTGGTTCTTCTACATGTTATGCAAAAACCCTTTAATACAGGAAAAAGTTGCAGAAGAAATCAGCCAAATTGTTGGGGTTCAAGGGCAAGAATTTGACATAAATTTGTTGACTGATTCAACTCTTGACAAAATGCATTATCTTCATGCAGCATTGGCTGAGACTTTAAGGCTCTATCCTGCAGTTCCTGTGGATGGAAGGACTGCAGAAATAGATGACATTCTTCCTGATGGCTATAAACTAAGAAAAGGAGATGGAGTGTACTACATGGCCTATTCCATGGGCAGGATGCCCTTCCTTTGGGGAGAAGATGCTGAAGATTTTAAACCCGAGAGATGGCTCAAAAATGGAACTTTTCGACCCGAGTCGCCTTTCAAATTCATTGCATTTCACGCGGGTCCTCGAATGTGTTTGGGCAAGGACTTTGCTTATCGACAAATGAAGATAGTATCGGCTGCTCTTCTTCAATCTTTTCGATTCAAATTAGCCGATCCGATGAGAAATACAATAATCAAAATAGATGAAACGGTGCGTTTGACACGGTATAAGAATTCAAATTCATTTCCCTCGCATTTCCGCCCAACGTCCCCAAATTTCTTGCGATCGGAGTTCGACGGTGCCGGACTGATGAAATCTCCGGCGACGGACGAAAACGAAGCTCCGAAGCGGCAATGGTCCCTGCGAGACTTCGACGTAGGAAAGCCTCTCGGCCGTGGAAAATTCGGAAGAGTTTATCTGGCTAGAGAACTCAAGAGCAAGCACATAGTGGCACTGAAGGTGATTTTCAAGGAGCAGATGGAGAAGTACAGAATTCATCATCAGTTAAGGCGAGAGATGGAAATCCAGACCCGTCTTCAGCACCCGAACGTGCTGCGCCTTTACGGATGGTTTCATGATGCTGAACGGATTTTCTTGATATTGGAATACGCTCACCGCGGTGAGCTTTATAGGGAGCTTAGGAAAAGTGGTCATCTCAACGAGAAGCAAGCTGCAACATACATTTTAAGCCTCACACAAGCACTGGCATATTGTCATGAGAAGCATGTGATTCACAGGGACATTAAGCCAGAAAATTTGCTCCTTGATCATGAGGGTCGGTTGAAAATTGCAGATTTTGGATGGTCAGTACAGTCAAGAAGCAAGAGACATACAATGTGTGGAACTTTAGATTACTTAGCCCCAGAAATGGTAGAGAATAAAGCTCATGACTATTCAGTAGATAATTGGACTTTGGGCATCCTTTGCTATGAGTTCCTTTATGGAGTGCCTCCATTTGAAGCTGAAACTCAATGTGACACTTTTGAAAGGATAATGAAGGTTGACTTAAACTTTCCTTTGACCCCTCGTGTCTCTACAGAAGCAAAAGATCTGATTGGCCTGCTTTTGGTGAGGGATTCCTCTAAAAGACTTTCACTTCAGAAGATTGTGCAGCATCCCTGGATAATCAAGAATGCAGATCCTAATGGTATTTGCAATAGTAAGCAGAAACATTAA | 2442 | 46.6 | MEIPTISTAISLTLFTAALILLPFAILLLRTIAGKSLTNPDYAPVYGTTYGQIRYFRSLFDHLTAVAKRRRTFRLIGAAYSEIYTVDPRNVEHVLRTRFADYAKGSKDREIAGDLLGEGIFAADGEKWKRQRKLASYEFSSRVLRDFSCSVFRRNARKLLRLLSGFSASGRVFDIQDLVMRSSLDSIFKVGFGVDLNCLDEPSNAGSGFMNAFDDSSAQIFWRYIDPFWKLKRFLNIGSEASFRNNLKIVNAFVHRLIADRRNLLHQPNLKNEKEDILSRFLVESEKDPTGKNDEYLRDIVLNFMLAGKDTTAGTLSWFFYMLCKNPLIQEKVAEEISQIVGVQGQEFDINLLTDSTLDKMHYLHAALAETLRLYPAVPVDGRTAEIDDILPDGYKLRKGDGVYYMAYSMGRMPFLWGEDAEDFKPERWLKNGTFRPESPFKFIAFHAGPRMCLGKDFAYRQMKIVSAALLQSFRFKLADPMRNTIIKIDETVRLTRYKNSNSFPSHFRPTSPNFLRSEFDGAGLMKSPATDENEAPKRQWSLRDFDVGKPLGRGKFGRVYLARELKSKHIVALKVIFKEQMEKYRIHHQLRREMEIQTRLQHPNVLRLYGWFHDAERIFLILEYAHRGELYRELRKSGHLNEKQAATYILSLTQALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYSVDNWTLGILCYEFLYGVPPFEAETQCDTFERIMKVDLNFPLTPRVSTEAKDLIGLLLVRDSSKRLSLQKIVQHPWIIKNADPNGICNSKQKH | 813 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 51674549 | 51688784 | + | Sed0020383.1 | Sed02g1629 | 705297 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed02g1629 | 813 | Gene3D | Cytochrome P450 | 40 | 505 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | PRINTS | E-class P450 group I signature | 316 | 342 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | PRINTS | E-class P450 group I signature | 296 | 313 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | PRINTS | E-class P450 group I signature | 365 | 383 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | PRINTS | E-class P450 group I signature | 443 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | PRINTS | E-class P450 group I signature | 453 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | FunFam | Serine/threonine-protein kinase ark1 | 538 | 811 | - | - | |
| Sed02g1629 | 813 | Gene3D | Phosphorylase Kinase; domain 1 | 534 | 629 | - | - | |
| Sed02g1629 | 813 | ProSiteProfiles | Protein kinase domain profile. | 546 | 797 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed02g1629 | 813 | ProSitePatterns | Protein kinases ATP-binding region signature. | 552 | 579 | IPR017441 | GO:0005524(InterPro) | |
| Sed02g1629 | 813 | SUPERFAMILY | Cytochrome P450 | 41 | 498 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | SMART | serkin_6 | 546 | 797 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed02g1629 | 813 | Pfam | Cytochrome P450 | 57 | 480 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | SUPERFAMILY | Protein kinase-like (PK-like) | 537 | 801 | IPR011009 | - | |
| Sed02g1629 | 813 | CDD | CYP86A | 71 | 481 | - | - | |
| Sed02g1629 | 813 | CDD | STKc_Aurora | 545 | 797 | - | - | |
| Sed02g1629 | 813 | PRINTS | P450 superfamily signature | 453 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | PRINTS | P450 superfamily signature | 307 | 324 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | PRINTS | P450 superfamily signature | 366 | 377 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | PRINTS | P450 superfamily signature | 444 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed02g1629 | 813 | Gene3D | Transferase(Phosphotransferase) domain 1 | 630 | 813 | - | - | |
| Sed02g1629 | 813 | PANTHER | CYTOCHROME P450 | 25 | 481 | - | - | |
| Sed02g1629 | 813 | FunFam | Aurora kinase A | 538 | 629 | - | - | |
| Sed02g1629 | 813 | Pfam | Protein kinase domain | 547 | 797 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Sed02g1629 | 813 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 665 | 677 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Sed02g1629 | 813 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 446 | 455 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g1629 | Sed-Chr2:51674549 | Sed12g1382 | Sed-Chr12:11066301 | 2.00E-106 | dispersed | |
| Sed02g1627 | Sed-Chr2:51642719 | Sed02g1629 | Sed-Chr2:51674549 | 7.00E-87 | proximal | |
| Sed12g0231 | Sed-Chr12:1311267 | Sed02g1629 | Sed-Chr2:51674549 | 1.70E-157 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 78829 | PF00067 | p450 | 7.50E-74 | No_clan | Sed | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed02g1629 | - | - | - | 0.0 |