Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1642 ATGGATTTATCTTGTAATACTTGGAAGCAAAATGCGTTATGTGGTAGTGTAAGAACATATTGCAAGAAGTTTGACCAGTTTGGTCCCAGTTATGTGCTTAGACGTAGAATTTTTGTCGCTAAGTTGATTGGTGGTTCAAAAGTAGTTTATAAAGTGCCTAAGAAGAGAAACGGTACTGTGGCTGCTAGCAATTTCAATCATTTGAGTCTGGTTTGTGCTAGCAAGTTCGATGGTGCTTTGAAAATTTTTAAGCACCAGGGATTCTTGAACTGTAACAATAAAATAGGAAGAAGGATGGGAATGGTTCATTTAAAGTGTCAAAGCAATGATTCCCAAGCATTTATTGAAGGAAATGGAAGAAATGTGGAAAATGTAGATACTGGTGATGAAGGATCCAGTTCCGAGCCTACTGATGTTGTAGGGCCAGCTGATTCCAGAGAACTTGATGGAGAAGCAGAAGCGCTAGAAACAGATGCACCGACTGTGGATGAGCTTAGAGAATTTCTGCAAAAGGCTATGACAGAATTGGAAGTTGCAAGACTTAACAGTACCATGTTTGAGGAGAAGGCCCAAAAGATATCAGAAGCAGCAATAGATTTGCAAGATGAAGCAGCTCTAGCTTGGAATGATATGAACTCTACTCTCGTTTCTGTACAACAGATAGTGAATGAAGAATATGTGGCTAAGGAAGCTGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGAAATAGAGTCATTGGAGCTGGCAAAAGGGGGAAATGATTATCAAGAAGCATCTATAGATAGTGAGAGATACATTGATGGAAAGGAAGAGCAAGAAGTGTTGTTAGTCGCTCAGGAGTACATCAAAGAATGCCGTGCTAATTTGGAAACTTGTGATCTGGAATTGAAGCGCTTACAAAGTAAAAAGGAAGAGTTACAGAAAGAAGTGGACAAGTTGAATGAGTTGGCTGAAAAAATACAATTGAATGCATTGAAAGCTGAAGAAGATGTGACAAATATAATGCTTTTGGCTGAGCAAGCTGTTGCATTTGAACTTGAGGCTGCCCAAAGGGTCAGTGATGCTGAAATAGCTTTGCAGAAAGTGGATAAATCTTTATCAAATTCTTTTGTTGACACTTTGGCAACCACACATGGGTCAAATGGTATTGAAGATGTTGCTAATGAGGATAATAAGGAAGTTCTAGAAATTCCTAGTGATATTGCTGTTGAAACTGATAGAGATTTGCTAGTCAGTGGTGGTTCCTTAGCTGTCAAATCTCTGGCAGGCAACTTTTCAGATTTTGAAGACTTTGATCAACCATATGACTTAAGTGATAGCGAGAATGAAAAGTCGAGTTCAGACTTCTCAAAGGAGGTTGAATCTGGAGCAGAGAAGTCGACTATGAGTCAAGCAAAAAAGCAGGAAACACAGAAAGATTTGACCAGAGAAGGTTCACCTTCAAATTCCTCCAAGGCTTTGTTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTTTCCTCTACGGATGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCCTAGATTCCATGAAAAAGCAATTGCCGAAGCTTGTTGTGGGAGTAGTACTGTTAGGAGTAGGGATCACTATCTTTGCAAATCGAGCAGAAAAGAATTCTCAGATGTTACAGCAGCATGATGTTGTCATCACTAGCACTGATGAAGTTTCCTTGAATACAAAGCCTTTATTTCAACAGTTAAGAAAATTTCCTGAAAGATTGAAAGAGATAATCTCAAAGCTTTCCCATCAAGAGGTGAATGAAGAGGAGGCTTCATTGTTAGACATGTTATGGCTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTGGGGTACTTGGCTGCTGGCATTTTAATTGGACCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACAAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTCCTTTTCAACATTGGCCTTGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACGGCCGTGGTGGTTGGCTTGGTTGCTCATATTGTTTGTGGGCAGGCTGGCCCAGCTGCAATTGTCATTGGAAATGGTTTGGCTTTGTCATCAACTGCTGTCGTCCTTCAGGTGTTGCAAGAGCGAGGTGAAAGCACTTCAAGGCATGGGCGTGCCACATTTTCTGTCTTACTATTCCAGGATTTGGCTGTTGTGGTTTTGCTGATTCTCATACCTCTAATTTCGCCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTTAAGGCATTAGTTGCCATTTCTGCCATAATAGCTGGTGGGCGTCTGCTACTACGGCCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATTTTCTCGGCCAACACACTGCTTGTCATTCTGGGAACAAGTCTACTAACTGCCAGGGCTGGACTATCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTGCTTGCAGAAACGGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTTTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCCATCGATCCAAAACTTCTTCTTTCTAACTTTCCAGTTATCATGGGATCTTTGGGACTTCTTATCGGTGGCAAGACTATATTGGTAGCCTTGATTGGTAGACTTTTTGGTATCTCAATTATAAATGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCCTTTGTGGCGTTTGGAGAAGCTGTCAATCAGGGTATAATGTCTTCTCAGCTATCCTCATTATTGTTTCTTGTCGTGGGAATTTCAATGGCCATTACACCGTGGCTAGCGGCTGGTGGTCAGTTAATTGCTTCTCGCTTTGAGCAGCAGGATGTTCGGAGTTTATTACCTTCTGAAAGCGAGACTGACGATTTACAAGATCATATCATTCTTTGTGGATTTGGGCGAGTTGGTCAGATCATAGCCCAGCTTCTGTCGGAGCGACTAATTCCTTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCCATTGGACGTGCCCTAGACCTTCCTGTGTATTTTGGAGATGCGGGAAGTCGCGAGGTTCTTCATAAAATTGGTGCTGAAAGGGCATGTGCTGCTGCAATAACACTGGACACGCCGGGTGCGAATTACAGAACCGTTTGGGCTCTGAGCAAGTACTTCCCTAACGTCAAGACTTTTGTTCGAGCTCATGATGTTGATCATGGCCTTAATTTGGAGAAGGCTGGGGCAACTGCGGTGGTTCCTGAGACGTTGGAACCAAGCTTACAGTTGGCTGCTGCTGTTCTTGCTCAGGCTAAACTACCCACATCAGAGATTGCTGCAACAATCAATGAGTTTAGATCTCGACATTTATCCGAGCTTACCGAGCTATGTGAAGCCAGCGGAAGTTCGCTCGGATACGGGTTTTCTCGAATCATGAGTAAACCGAAAATCCAAACTTCTGACTCTTCAGATGAGAACCAAATCACAGAAGGGACACTTGCTATATGA 3648 42.49 MDLSCNTWKQNALCGSVRTYCKKFDQFGPSYVLRRRIFVAKLIGGSKVVYKVPKKRNGTVAASNFNHLSLVCASKFDGALKIFKHQGFLNCNNKIGRRMGMVHLKCQSNDSQAFIEGNGRNVENVDTGDEGSSSEPTDVVGPADSRELDGEAEALETDAPTVDELREFLQKAMTELEVARLNSTMFEEKAQKISEAAIDLQDEAALAWNDMNSTLVSVQQIVNEEYVAKEAVQKATMALSLAEARLQVEIESLELAKGGNDYQEASIDSERYIDGKEEQEVLLVAQEYIKECRANLETCDLELKRLQSKKEELQKEVDKLNELAEKIQLNALKAEEDVTNIMLLAEQAVAFELEAAQRVSDAEIALQKVDKSLSNSFVDTLATTHGSNGIEDVANEDNKEVLEIPSDIAVETDRDLLVSGGSLAVKSLAGNFSDFEDFDQPYDLSDSENEKSSSDFSKEVESGAEKSTMSQAKKQETQKDLTREGSPSNSSKALLKKSSRFFSASFFSSTDDGTEFTPALVFQGLLDSMKKQLPKLVVGVVLLGVGITIFANRAEKNSQMLQQHDVVITSTDEVSLNTKPLFQQLRKFPERLKEIISKLSHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKALVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLIGGKTILVALIGRLFGISIINALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQQDVRSLLPSESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKIGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKIQTSDSSDENQITEGTLAI 1215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51736712 51750179 + Sed0024442.1 Sed02g1642 705310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1642 1215 FunFam K(+) efflux antiporter 2 chloroplastic 607 993 - -
Sed02g1642 1215 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 618 898 IPR004771 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)
Sed02g1642 1215 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 326 1213 - GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER)
Sed02g1642 1215 MobiDBLite consensus disorder prediction 444 462 - -
Sed02g1642 1215 Pfam Sodium/hydrogen exchanger family 621 987 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed02g1642 1215 Gene3D - 607 995 IPR038770 -
Sed02g1642 1215 Coils Coil 162 182 - -
Sed02g1642 1215 ProSiteProfiles RCK N-terminal domain profile. 1019 1141 IPR003148 GO:0006813(InterPro)
Sed02g1642 1215 Gene3D - 1015 1179 - -
Sed02g1642 1215 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1016 1157 IPR036291 -
Sed02g1642 1215 FunFam K(+) efflux antiporter 2 chloroplastic 1015 1179 - -
Sed02g1642 1215 Pfam TrkA-N domain 1020 1133 IPR003148 GO:0006813(InterPro)
Sed02g1642 1215 Coils Coil 289 337 - -
Sed02g1642 1215 MobiDBLite consensus disorder prediction 440 492 - -
Sed02g1642 1215 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1642 Sed-Chr2:51736712 Sed12g0183 Sed-Chr12:1036950 0.00E+00 dispersed
Sed07g1090 Sed-Chr7:8012985 Sed02g1642 Sed-Chr2:51736712 2.00E-36 transposed
Sed08g1765 Sed-Chr8:32503088 Sed02g1642 Sed-Chr2:51736712 2.40E-34 transposed
Sed12g1770 Sed-Chr12:28822994 Sed02g1642 Sed-Chr2:51736712 5.50E-34 transposed
Sed12g0182 Sed-Chr12:1036950 Sed02g1642 Sed-Chr2:51736712 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1642 K03455 - csv:101213081 1876.29