Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1646 ATGAACAACAATAGGGGAAGGTATCCTCCAGGGATCGGCGCTGGACGGGGCGGAGGCGTCAATGCGAACCCTTCGTTTCAGTCAAGACCGCACCAGCAGCATCAACAACAATACGTACAGAGAAATTTGGTGCAGAATCAGCAGTATCAACAACAGCACCACCAGAACCAGAACCAGCATCAACATCAACACCAAAACCAACACCATCAGATTCAACAACACCAACAGTGGCTGATAAGGAACCAGTTAGGGGGTGGTCCAGCCGATTCAAATGTCGACGAGGTGGAGAAGACTGTACAATCCGAGGCTGTTGACTCGAGTTCACAAGATTGGAAGGCAAGGTTAAAGATTCCACCACCTGATACACGCTATAAAACAGAGGATGTGACGGCTACCAAAGGAAATGAATTCGAGGACTACTTTTTAAAACGTGAATTACTCATGGGAATCTATGAGAAAGGCTTTGAAAGACCATCTCCTATTCAAGAAGAAAGTATTCCGATTGCTTTAACTGGTAGTGATATTCTTGCTAGGGCAAAGAATGGAACTGGAAAGACAGCTGCATTTTGCATTCCTGCCTTGGAAAAGATTGATCAGGATAACAATGTTATCCAAGTTGTTATCCTCGTTCCGACTCGAGAGTTGGCTCTTCAAACTTCACAAGTTTGTAAGGAACTTGGGAAGAATTTGAATATTCAAGTTATGGTAACGACAGGTGGTACCAGTTTAAAGGATGATATAATGCGATTATATCAACCAGTTCATTTATTAGTTGGAACTCCTGGAAGAATATTAGATCTTGCAAAAAAAGGCATTTGTGTTCTGAAAGATTGTTCTATGCTTATTATGGATGAGGCTGATAAGCTTCTATCTCCAGAATTCCAACCTTCAATAGTGCAGCTGATTCGCCATTTGCCTACAAATCGGCAGGTTCTTATGTTTTCCGCTACCTTTCCTGTAACTGTGAAGGACTTCAAAGATAGATATCTTCACAAGCCCTACATTATAAACTTAATGGATGAGCTCACTCTAAAGGGTATCACCCAATTCTATGCATTTGTTGAAGAAAGACAGAAAGTGCACTGCCTTAATACTCTTTTCTCAAAGCTGCAAATTAACCAGTCAATTATATTCTGCAATTCGGTAAACCGAGTTGAGTTGTTAGCCAAGAAAATAACAGAGCTTGGTTATTCTTGTTTCTATATTCATGCAAAGATGCTGCAAGATCATCGTAACAGAGTATTTCACGACTTCCGAAATGGTGCATGTAGAAATCTTGTTTGTACTGATTTATTTACTAGGGGAATAGATATTCAAGCAGTTAACGTTGTTATTAACTTCGATTTTCCCAAGAATTCAGAGACATATCTACACAGGGTTGGACGATCTGGAAGGTTTGGACATCTTGGGTTAGCCGTGAATTTGATCACCTATGAGGATCGTTTCAATTTGTACAGGATTGAGCAAGAACTTGGGACTGAAATTAAACAAATTCCACCCCATATTGACCAGGGAATCTACTGCGTGTAA 1530 40.72 MNNNRGRYPPGIGAGRGGGVNANPSFQSRPHQQHQQQYVQRNLVQNQQYQQQHHQNQNQHQHQHQNQHHQIQQHQQWLIRNQLGGGPADSNVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKNLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGICVLKDCSMLIMDEADKLLSPEFQPSIVQLIRHLPTNRQVLMFSATFPVTVKDFKDRYLHKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQGIYCV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51765807 51772741 + Sed0018792.2 Sed02g1646 705314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1646 509 Gene3D - 340 508 IPR027417 -
Sed02g1646 509 SMART ultradead3 154 350 IPR014001 -
Sed02g1646 509 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 506 IPR001650 -
Sed02g1646 509 SMART helicmild6 386 467 IPR001650 -
Sed02g1646 509 Pfam Helicase conserved C-terminal domain 359 467 IPR001650 -
Sed02g1646 509 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 282 290 IPR000629 -
Sed02g1646 509 CDD DEADc_DDX6 137 337 - -
Sed02g1646 509 FunFam ATP-dependent RNA helicase DDX6 340 509 - -
Sed02g1646 509 FunFam ATP-dependent RNA helicase DDX6 116 339 - -
Sed02g1646 509 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 135 163 IPR014014 GO:0003724(InterPro)
Sed02g1646 509 Pfam DEAD/DEAH box helicase 159 324 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Sed02g1646 509 CDD SF2_C_DEAD 347 476 - -
Sed02g1646 509 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 166 336 IPR014001 -
Sed02g1646 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 489 IPR027417 -
Sed02g1646 509 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 50 508 - GO:0000932(PANTHER)|GO:0003729(PANTHER)|GO:0010494(PANTHER)|GO:0017148(PANTHER)|GO:0033962(PANTHER)|GO:0034063(PANTHER)
Sed02g1646 509 MobiDBLite consensus disorder prediction 21 80 - -
Sed02g1646 509 Gene3D - 91 339 IPR027417 -
Sed02g1646 509 MobiDBLite consensus disorder prediction 1 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1646 K12614 - - csv:101203201 880.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1646 Sed-Chr2:51765807 Sed12g0176 Sed-Chr12:1004536 9.60E-261 dispersed
Sed02g1645 Sed-Chr2:51765807 Sed02g1646 Sed-Chr2:51765807 1.80E-283 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1087 . . . . . . . Bma10g00062 . Cmo14g00243 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed02g1646 . . . Cma14g00252 . Car14g00230 . . Bhi11g02018 Tan04g2363 Cmetu06g1316 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004275 2 1 2 2 2 1 2 1 1 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 2 42