Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1648 ATGGAAGTTGATTGGGATCTCCACGCCGTCGTTAGAGGCTACTCCGCCGTGACCTCCGCCGTGTCCTCCGCCGCCGCCGTGACCTCTGTTTCTCCAAAGTCCAATAACTTTGTCCCTTTTGGTTTTGCTAGAGACCAAACAAACCATTTATTATCCTCTTCTCAGCATCCATTTGAAGCCCCAAATTGTAATTCCTCTCAGGATTTGCACGAGCTTTTCAAACCCTTTTTCCCCAAATCTTCACAACCCTCCCCGCCACCGCCACCGCCGCCGTCTGCTCCGCCGCTTCTCTCTTCTCCGGCAGCCAAAATTCTGACCCATCAGACCCAGAAACAGAGCACTCATATCCCCAAACAGCTTCATTCAGCCTCTGTTTCTGCTCCCAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCAGCAGAGTCTCTGTCCTCTGACATTTGGGCTTGGAGAAAATATGGCCAAAAACCCATTAAAGGATCTCCTTATCCAAGGGGATATTACAGATGTAGCAGTTCAAAAGGTTGCATGGCCCGAAAACAAGTAGAGAAGAACAGATCCGACCCGGGAATGTTCATAGTCACTTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAATTCTCTCGCCGGTTCAACCCGCCAGAAACCCACCACATCCGGATCTGAAAAACCCGACCCGAAGAAACCCGTCTGCTCGTCGGAAGAACAGAGTACAAAAACAGAGAGCAAAGAAGAAAAAGAGGAATTATTGGCAGAAGATGAAGAAGATGACGATTTGGGAATCTCGGATTTGATCGTCGACGATGATTTCTTCATGGGTTTTGAAGAACTCGACAGTCCCGTCGCCGGCGACAGCTTTTCCGATCAGATTCCGGCGATCTGGGGGTCCACATGGTTGTTCAACAATGCCACCGCCACCGCTAGCAGCATTTAA 957 50.37 MEVDWDLHAVVRGYSAVTSAVSSAAAVTSVSPKSNNFVPFGFARDQTNHLLSSSQHPFEAPNCNSSQDLHELFKPFFPKSSQPSPPPPPPPSAPPLLSSPAAKILTHQTQKQSTHIPKQLHSASVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVEKNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPTTSGSEKPDPKKPVCSSEEQSTKTESKEEKEELLAEDEEDDDLGISDLIVDDDFFMGFEELDSPVAGDSFSDQIPAIWGSTWLFNNATATASSI 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51786030 51787934 - Sed0016084.1 Sed02g1648 705316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1648 318 SMART WRKY_cls 149 209 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1648 318 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 275 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed02g1648 318 MobiDBLite consensus disorder prediction 204 269 - -
Sed02g1648 318 MobiDBLite consensus disorder prediction 102 126 - -
Sed02g1648 318 MobiDBLite consensus disorder prediction 207 227 - -
Sed02g1648 318 FunFam WRKY transcription factor 22 133 203 - -
Sed02g1648 318 Pfam WRKY DNA -binding domain 151 208 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1648 318 SUPERFAMILY WRKY DNA-binding domain 147 210 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1648 318 MobiDBLite consensus disorder prediction 75 142 - -
Sed02g1648 318 MobiDBLite consensus disorder prediction 79 97 - -
Sed02g1648 318 ProSiteProfiles WRKY domain profile. 144 210 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1648 318 Gene3D WRKY domain 133 203 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1648 318 MobiDBLite consensus disorder prediction 235 254 - -
Sed02g1648 318 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3551 Sed-Chr1:64686107 Sed02g1648 Sed-Chr2:51786030 2.10E-38 dispersed
Sed02g1648 Sed-Chr2:51786030 Sed10g0042 Sed-Chr10:271357 1.90E-36 dispersed
Sed12g0173 Sed-Chr12:990905 Sed02g1648 Sed-Chr2:51786030 8.30E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37666 PF03106 WRKY 9.40E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1648 K13425 - csv:101217082 387.111