Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1683 ATGGCGGTTGTGAGTTCTGTACAAGCAACTACCCCTCGAGCTGGTCCAACTAATTATGCTGAAGCTTCGCCTTCACCAATTATGATCAGTTCAAGCAGAGAGATTGTAGAAGAGCCAGTGAGAGCTATTTGTGAAGATGTAATTTGGGTTGCCGTTGGAAAAGATGTGAAAGAGTGCCTATCAGTTTTGAGGTATGCACTGAAATCTTCACGTGGGAAGAAGATTTGCCTCCTCTATGTTCATGTCCCTGCACTGATGATTCCATTAATGGGAACCAAATTTCATGCGAACTCATTGCAGAAAGAGGAAGTGAGAGCATATCGTGAGTTTGAGAAGCAAAATTTGCCGAGGGTCATGAATGAGTATATTCTATACTGCCTTCAAGAAGGGGTTCAAGCTGAGAGATTATGTGCTGAAGCTGAGAGTATTGAAAAGGGAATAGTCGATATGATTTCCCTGCACAGGATTAAAAAGCTTGTTATGGGAGCAGCTGTAGACAAGTACTATTCGAGGAAAATGGTGGATCTGAAGTCTAAGAAAGCCATTTATGTGCGTTCAGAGGCACCAGCTTTCTGTCACATTGAGTTTATTTGCAAGGGGTACCTTATCTGCACCAGGGAGGGTATATCAGATGGAGCTCAAGTAGAAATCACCATCTCATTGCCACAAACAAGTCCAGATGCTGAAGCCCCAGGATTTGCCAACCAAAGATCTCGGTCGCTGCCACTGGGGCAGGTAAGTTGCAGGGAAGTTGGAAGTCCATCTACAGATTTACGTCCTAGAGGGAGATCATTGCTTGTTGACCATTTTAGAGGGAACATACTAGATTCTTCCTCTTCTCCTGATATAATGAATGGCGTTCGCACTGCAAGAAGTTCGGATGCTAAAGAGGCTTTTGATGAATGGGGCCTATTGGTCAGGAGAAGTCCTTCAGAAAGCTCAGAGACATTACGCTCTCCTCGTGGTGTGATCGACATGGCTCCTTCTCCACTTTCCAGGGTTGAGTTCTGTGAAAATGGGCTAGAGGATGGGAAAACCAGAGATTTCCTTTACAATCAATGCGAACGGGTGATGATGGAGGCTGCAAATGCGAGGCGCGATGCATTCTTAGGGGCAATTGCTCGTAGAAAATCTGAGAAAGAGACGGTTAATGTTCTACGCAAGGTTAAAGCTGCAGAAGAGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAACTAGGGAGGGAAAAGGTGAAACTTGAAAGCATAAAGAAGCAGCTAAATGAAGAGATGGAAGAACTCCGGATATCCCATGATCAGAAGGCATGCCTCGAGAGAGAACTTTTAGAATCCGATCTAATGGCGAAGGAGTTGGAGCAAAAGATTCTTTCAGCTGTTGAATTGTTAAAGAGATACAAAAGGGAGCGAGAGGAGTTGCAGATTGAACGCGACAATGCACTTATAGAAGCAGAGGAGCTTAGAAAAAATCAATCTGTAAGCGGATATCGTCCACAGTTCTTTACCGAGTTCCCTTTTCAGGAGATTGAGGAAGCTACTAGAAACTTCGATCCCTCCCTGAAGATTGGAGAAGGGGGATATGGGAGTATATATAAAGGTTTCTTGCGTCATACTATGGTAGCTATAAAAATACTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTTTTGAGTAAGACGAGACATCCCAATCTTGTCACGCTCATTGGAGCCTGTCCGGAAGCTTGGGTTCTCATCTACGAATACCTCTGTAACGGAAGCCTCGAAGATAGGCTCAGCTGCAAGGACAATACTCCACCTTTATCTTGGCAAACACGAATACGCATCGCCACTGAGTTATGCTCGGCCCTTATGTATCTTCACTCAAGTAAGCCCCACAACATCATTCATGGCGACTTGAAACCTGCAAATGTATTACTTGATGCAAACTTTGTGTGCAAGCTTGGTGACTTTGGAATTTGTCGCTTATTATCTCGGGATGAAATGCTAGCCAACAATGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACCTGGATCCTGAATACCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTCTATTCGTTCGGGATAATACTGTTACGGTTATTGACGGGTAAATCTGCAATAGGGATAGCAAAGGAAGTCCAATATGCAATAGGAAACGGAAAGTTAAAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTTGTGCAGGCCGAACAGCTCACTCGATTGGCATTGAGGTGCTGTGATATGAACCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGAGCTTCGTGCGGGGGCTTATTGTCTATCCAGCTCGGTTCTGCCGAACACTTCCAACCTCCCCCTTATTTTATCTGTCCCATCTTTCAGGAAGTAATGCAGGATCCTCATGTGGCTGCAGACGGTTTTACATATGAAGCAGAGGCTGTGAGAGGATGGCTAGACAGTGGAAACGATACTTCGCCAATGACAAATCTTAGGCTCGAGCACCGCAACCTTGTCCCAAACCGCGCTCTTCGTTCGGCTATCCAGGAGTGGCTCCAAAGAAACTGA 2637 44.9 MAVVSSVQATTPRAGPTNYAEASPSPIMISSSREIVEEPVRAICEDVIWVAVGKDVKECLSVLRYALKSSRGKKICLLYVHVPALMIPLMGTKFHANSLQKEEVRAYREFEKQNLPRVMNEYILYCLQEGVQAERLCAEAESIEKGIVDMISLHRIKKLVMGAAVDKYYSRKMVDLKSKKAIYVRSEAPAFCHIEFICKGYLICTREGISDGAQVEITISLPQTSPDAEAPGFANQRSRSLPLGQVSCREVGSPSTDLRPRGRSLLVDHFRGNILDSSSSPDIMNGVRTARSSDAKEAFDEWGLLVRRSPSESSETLRSPRGVIDMAPSPLSRVEFCENGLEDGKTRDFLYNQCERVMMEAANARRDAFLGAIARRKSEKETVNVLRKVKAAEELYAEELKQRKEVEQELGREKVKLESIKKQLNEEMEELRISHDQKACLERELLESDLMAKELEQKILSAVELLKRYKREREELQIERDNALIEAEELRKNQSVSGYRPQFFTEFPFQEIEEATRNFDPSLKIGEGGYGSIYKGFLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKTRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMYLHSSKPHNIIHGDLKPANVLLDANFVCKLGDFGICRLLSRDEMLANNETLVWRTDNPKGTFAYLDPEYLSSGELTTKSDVYSFGIILLRLLTGKSAIGIAKEVQYAIGNGKLKSILDPLAGDWPFVQAEQLTRLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGLLSIQLGSAEHFQPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGNDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51956552 51963986 - Sed0001687.3 Sed02g1683 705351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1683 878 CDD STKc_IRAK 525 788 - -
Sed02g1683 878 SUPERFAMILY Protein kinase-like (PK-like) 493 777 IPR011009 -
Sed02g1683 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 807 878 IPR013083 -
Sed02g1683 878 Gene3D Phosphorylase Kinase; domain 1 498 591 - -
Sed02g1683 878 ProSiteProfiles Protein kinase domain profile. 519 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1683 878 Gene3D Transferase(Phosphotransferase) domain 1 592 791 - -
Sed02g1683 878 PANTHER OS02G0152300 PROTEIN 49 872 IPR051348 -
Sed02g1683 878 SMART serkin_6 519 785 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1683 878 Coils Coil 389 493 - -
Sed02g1683 878 SMART Ubox_2 811 874 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed02g1683 878 CDD RING-Ubox_WDSUB1-like 809 864 - -
Sed02g1683 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1683 878 ProSitePatterns Protein kinases ATP-binding region signature. 525 546 IPR017441 GO:0005524(InterPro)
Sed02g1683 878 Pfam U-box domain 809 878 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed02g1683 878 Pfam Protein kinase domain 524 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1683 878 MobiDBLite consensus disorder prediction 1 20 - -
Sed02g1683 878 FunFam receptor-like protein kinase FERONIA 483 591 - -
Sed02g1683 878 SUPERFAMILY RING/U-box 803 878 - -
Sed02g1683 878 CDD STK_N 47 200 - -
Sed02g1683 878 ProSiteProfiles U-box domain profile. 807 878 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1681 Sed-Chr2:51956552 Sed02g1683 Sed-Chr2:51956552 0.00E+00 dispersed
Sed02g1683 Sed-Chr2:51956552 Sed04g2238 Sed-Chr4:36129748 2.70E-218 dispersed
Sed02g1682 Sed-Chr2:51956552 Sed02g1683 Sed-Chr2:51956552 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78834 PF00069 Pkinase 2.30E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1683 - - - 0.0