Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1744 ATGGATCGACACCTTACGATCCTTGCTTGTGTTCTTCGTTCATTCATTGACTTATTTTATCTACTTCATATGATCTTTGAATTTCGAACTGGTTTTCTGTCCCCTTCTATACCAGTATCTGTAAGTGGTGAATTAATTGAAGATCCTGCAGCTATTGCAAAGAGATACCTCTCCTCACACTTCTTCATTGATATGTTATCTATTCTCCCACTGCCTCAGCTTTTGGTATTAGTAATCAGACCTGCAGCTTGCACTGTTCCATTGAAGATGAAAAACTTGTTGAAGCTTGCAGTTCTTTTGCAATATATTCCAAGGATTCTTCGAATTTATCCACTATACAGAGTAGTAACCAGAACTTCTGGGATACTGATCCAAACTGCTTGGAGTGGAGCTGCCTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAACAACATGCTGGCTCAAGGAATGCAAAGGATCAAAAAAGTGTATTCAAGATTTTCTGCACTGTGGAGATACTCTTACAGCAATGTCCTTGTCTATAAATAAGTATTGCTCTGTTAAAGAATCTGAAGATGACAAGACGAAAACCTTCGACTTCGGGATGTATGATGCAGCCCTCAAGTTTGAGTTAACCGAGACTACGAGTTTTCGCCGCAAATTTTTCTATTCCTTCTGGTGGGCTCTACAAAATGTCAGCTCTAGTGGACAAAACCTTAAAGTTAGCCATGACATGGGAGATGTTATTTTTGCTGTCTTCATTGCCATTCTTGGTTTGGTTTTGTTTGCCTTTCTCATTAGCAACATTCAGAAATATTTGCAGTCAATAACTGTTAAAGAAGAGCAAATGAGAATTAACCGAAGAGATGCCGAGCATTGGATGGCACACCGTATGCTCCCGGAGAACTTGAGGCAGCGTATTAGACGATACGATCAATACAAATGGCAGCTAAACAGGGGAGTAAAGGAAGAAGAACTCATCAGTAACCTTCCTAAAGACCTTAGGAGAGACATCAAACACCATCTCTGCTTGGCCATTCTTAAGAAAGTGCCACTACTTAGCAGCATGGATAAGCAATTGTTGGATTCAATGTGTGAATATCTCAAGCCTGTGTTATTCACAAAGAAGAGTTTTATTCTACAAGAGGGTGACCCAATTGATATGATGCTATTTATCCTGAAAGGAAAGCTAGCTACCATTATTACTTACGGTTCGAAAAACAATTCGTACTCGGCCATTCTTAGTACTGGTGACTTTTGTGGTGAAGAGCTGGTTCAATGGGCTATGGATCTAGCCTCCACTTCTCTTCCCATTTCAACCACAACAGTTAAATCTCTAACTGAGGTTGAAGCTTTTGCTATAAAAGCTGATGACCTGAAATCTGTAACTCATCAGTTCCACTTCCACCGCCTAAATTGCAAGCAATTCCAACTCTCAGTGAGGTTCTACTCTCATCATTGGAAAGTTTGGGCAGCCTATAAAATACAAGAAGCTTGGCATGAGTACTGTGAAAGAAAGAAGAGAGGGGGTGGAGATGGCAGGTTTCAAGATGCATTGGCTAAAATAGTTGGCGGCTCCGCGAGCTTCGGTGCCACGCTATATGCATCCATATTCATATCGCATCTACTGCAACTCGTGCAACAAGATCAACACCAGCAAACTGCTCAATCCACTCGAGTGATGATGCTACCGCCGCCTCCGAAGCCAGACGAAGAGCAAGACATTCTATCCTAA 1758 41.13 MDRHLTILACVLRSFIDLFYLLHMIFEFRTGFLSPSIPVSVSGELIEDPAAIAKRYLSSHFFIDMLSILPLPQLLVLVIRPAACTVPLKMKNLLKLAVLLQYIPRILRIYPLYRVVTRTSGILIQTAWSGAAFNLLIYMQASHVVGAIWYLLSIERQTTCWLKECKGSKKCIQDFLHCGDTLTAMSLSINKYCSVKESEDDKTKTFDFGMYDAALKFELTETTSFRRKFFYSFWWALQNVSSSGQNLKVSHDMGDVIFAVFIAILGLVLFAFLISNIQKYLQSITVKEEQMRINRRDAEHWMAHRMLPENLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHLCLAILKKVPLLSSMDKQLLDSMCEYLKPVLFTKKSFILQEGDPIDMMLFILKGKLATIITYGSKNNSYSAILSTGDFCGEELVQWAMDLASTSLPISTTTVKSLTEVEAFAIKADDLKSVTHQFHFHRLNCKQFQLSVRFYSHHWKVWAAYKIQEAWHEYCERKKRGGGDGRFQDALAKIVGGSASFGATLYASIFISHLLQLVQQDQHQQTAQSTRVMMLPPPPKPDEEQDILS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52332684 52337278 + Sed0011686.1 Sed02g1744 705412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1744 585 ProSiteProfiles cAMP/cGMP binding motif profile. 360 470 IPR000595 -
Sed02g1744 585 MobiDBLite consensus disorder prediction 563 585 - -
Sed02g1744 585 CDD CAP_ED 360 473 IPR000595 -
Sed02g1744 585 Gene3D - 1 286 - -
Sed02g1744 585 SMART cnmp_10 360 491 IPR000595 -
Sed02g1744 585 Gene3D Jelly Rolls 358 475 IPR014710 -
Sed02g1744 585 FunFam Cyclic nucleotide-gated ion channel 1 287 351 - -
Sed02g1744 585 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 516 - -
Sed02g1744 585 SUPERFAMILY Voltage-gated potassium channels 2 282 - -
Sed02g1744 585 Pfam Cyclic nucleotide-binding domain 381 471 IPR000595 -
Sed02g1744 585 Gene3D Helix hairpin bin 287 351 - -
Sed02g1744 585 SUPERFAMILY cAMP-binding domain-like 287 475 IPR018490 -
Sed02g1744 585 Pfam Ion transport protein 10 288 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1744 Sed-Chr2:52332684 Sed02g1746 Sed-Chr2:52332684 0.00E+00 dispersed
Sed02g1743 Sed-Chr2:52318503 Sed02g1744 Sed-Chr2:52332684 4.50E-178 tandem
Sed02g1744 Sed-Chr2:52332684 Sed02g1745 Sed-Chr2:52332684 4.90E-277 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1744 K05391 - csv:101206492 842.032