Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1745 ATGGATCGACACCTTACGATCCTTGCTTGTGTTCTTCGTTCATTCATTGACTTATTTTATCTACTTCATATGATCTTTGAATTTCGAACTGGTTTTCTGTCCCCTTCTATACCAGTATCTGTAAGTGGTGAATTAATTGAAGATCCTGCAGCTATTGCAAAGAGATACCTCTCCTCACACTTCTTCATTGATATGTTATCTATTCTCCCACTGCCTCAGCTTTTGGTATTAGTAATCAGACCTGCAGCTTGCACTGTTCCATTGAAGATGAAAAACTTGTTGAAGCTTGCAGTTCTTTTGCAATATATTCCAAGGATTCTTCGAATTTATCCACTATACAGAGTAGTAACCAGAACTTCTGGGATACTGATCCAAACTGCTTGGAGTGGAGCTGCCTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAACAACATGCTGGCTCAAGGAATGCAAAGGATCAAAAAAGTGTATTCAAGATTTTCTGCACTGTGGAGATACTCTTACAGCAATGTCCTTGTCTATAAATAAGTATTGCTCTGTTAAAGAATCTGAAGATGACAAGACGAAAACCTTCGACTTCGGGATGTATGATGCAGCCCTCAAGTTTGAGTTAACCGAGACTACGAGTTTTCGCCGCAAATTTTTCTATTCCTTCTGGTGGGCTCTACAAAATGTCAGCTCTAGTGGACAAAACCTTAAAGTTAGCCATGACATGGGAGATGTTATTTTTGCTGTCTTCATTGCCATTCTTGGTTTGGTTTTGTTTGCCTTTCTCATTAGCAACATTCAGAAATATTTGCAGTCAATAACTGTTAAAGAAGAGCAAATGAGAATTAACCGAAGAGATGCCGAGCATTGGATGGCACACCGTATGCTCCCGGAGAACTTGAGGCAGCGTATTAGACGATACGATCAATACAAATGGCAGCTAAACAGGGGAGTAAAGGAAGAAGAACTCATCAGTAACCTTCCTAAAGACCTTAGGAGAGACATCAAACACCATCTCTGCTTGGCCATTCTTAAGAAAGTGCCACTACTTAGCAGCATGGATAAGCAATTGTTGGATTCAATGTGTGAATATCTCAAGCCTGTGTTATTCACAAAGAAGAGTTTTATTCTACAAGAGGGTGACCCAATTGATATGATGCTATTTATCCTGAAAGGAAAGCTAGCTACCATTATTACTTACGGTTCGAAAAACAATTCGTACTCGGCCATTCTTAGTACTGGTGACTTTTGTGGTGAAGAGCTGGTTCAATGGGCTATGGATCTAGCCTCCACTTCTCTTCCCATTTCAACCACAACAGTTAAATCTCTAACTGAGGTTGAAGCTTTTGCTATAAAAGCTGATGACCTGAAATCTGTAACTCATCAGTTCCACTTCCACCGCCTAAATTGCAAGCAATTCCAACTCTCAGTGAGGCATGTGAACTTATATATAAATTTTTGTACCATTGTCACCATAAACTGCTTTCATTTCAACTGCTTCTTAAGTGATTGTTTTATAATCCTTGTTCTCTAG 1566 39.21 MDRHLTILACVLRSFIDLFYLLHMIFEFRTGFLSPSIPVSVSGELIEDPAAIAKRYLSSHFFIDMLSILPLPQLLVLVIRPAACTVPLKMKNLLKLAVLLQYIPRILRIYPLYRVVTRTSGILIQTAWSGAAFNLLIYMQASHVVGAIWYLLSIERQTTCWLKECKGSKKCIQDFLHCGDTLTAMSLSINKYCSVKESEDDKTKTFDFGMYDAALKFELTETTSFRRKFFYSFWWALQNVSSSGQNLKVSHDMGDVIFAVFIAILGLVLFAFLISNIQKYLQSITVKEEQMRINRRDAEHWMAHRMLPENLRQRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKHHLCLAILKKVPLLSSMDKQLLDSMCEYLKPVLFTKKSFILQEGDPIDMMLFILKGKLATIITYGSKNNSYSAILSTGDFCGEELVQWAMDLASTSLPISTTTVKSLTEVEAFAIKADDLKSVTHQFHFHRLNCKQFQLSVRHVNLYINFCTIVTINCFHFNCFLSDCFIILVL 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52332684 52337278 + Sed0011686.2 Sed02g1745 705413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1745 521 ProSiteProfiles cAMP/cGMP binding motif profile. 360 470 IPR000595 -
Sed02g1745 521 SUPERFAMILY cAMP-binding domain-like 287 475 IPR018490 -
Sed02g1745 521 Pfam Cyclic nucleotide-binding domain 381 471 IPR000595 -
Sed02g1745 521 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 500 - -
Sed02g1745 521 SMART cnmp_10 360 495 IPR000595 -
Sed02g1745 521 CDD CAP_ED 360 473 IPR000595 -
Sed02g1745 521 Pfam Ion transport protein 10 288 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g1745 521 Gene3D Jelly Rolls 358 475 IPR014710 -
Sed02g1745 521 SUPERFAMILY Voltage-gated potassium channels 2 282 - -
Sed02g1745 521 FunFam Cyclic nucleotide-gated ion channel 1 287 351 - -
Sed02g1745 521 Gene3D Helix hairpin bin 287 351 - -
Sed02g1745 521 Gene3D - 1 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1745 Sed-Chr2:52332684 Sed12g0102 Sed-Chr12:564415 6.20E-207 dispersed
Sed02g1744 Sed-Chr2:52332684 Sed02g1745 Sed-Chr2:52332684 4.90E-277 tandem
Sed02g1745 Sed-Chr2:52332684 Sed02g1746 Sed-Chr2:52332684 2.90E-273 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1745 K05391 - csv:101206492 709.138