Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1777 ATGGAGTCTCCTGATTCTGCTGTCGAGAAAGATCCAACGGGTCGATACGTTCGGTACGATGAAGTCTTGGGAATGGGCGCTTTCAAGACGGTTTACAAGGCATTTGACGAAGTTGATGGAATCGAAGTTGCATGGAACCAAGTTAGGATTGACAGTTTTTTGCAGTCATCTGAGGATTTGGAAAAGTTGTACTCCGAAGTACATCTACTTAAATCATTAAAACATGAGAATATTATCAAGTTCTACAATTCTTGGGTGGATGATAAGAAGAAAACAGTCAACATGATCACCGAGCTCTTCACATCTGGGAGTTTGAGGCAATACCGTAAAAAGCATAAACATGTTGATATGAAAGCCATAAAGAATTGGGCACGACAGGTTCTTCGAGGTCTGGTCTATCTTCACAGTCACAACCCTCCCATTATTCATAGAGATTTGAAAGGTGATAATATTTTTATTAATGGAAATCATGGAGAAGTTAAAATTGGAGATCTTGGATTAGCAATTGTTATGCAGCGCCCTACCGCCCAAAGTGTAATTGGAACTCCCGAGTTCATGGCTCCTGAACTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTCACCTTTGAGTATCCATATAGTGAATGCAGAAATCCAGCTCAAATATATAAGAAAGTTACATCTGGTATCAAACCTGCTTCTCTTGCTAAGGTGAGTGATCCACAGATCATGAAGTTTATCAATAAATGTTTGGTTCCAGCGCAGGAGAGGTTGTCTGCAAAAGATCTTCTTGAAGATTCATTCCTTCAAGTTGAAAACCCAAAAGAATCAAAGCGTGAGCCCTTACAGTTACCCAACCTTGTTCCTAAATCAGTAAATTTGTTGAAGAGTGGGCCGATTTCCATCGATATTGACATTGACCATAAACAACATTCTTTAAGCACCTGTGCTGGAAGCAATAGTGGGAGTCCAGGCTTTCCAGTTATGGAACTTCAGACCATGAATAAGAACAATGAGTTTAGGCTTTGTGGAAATAAGAATGATGACAACTCTGTTGCATTAACCTTGCGTATTGCAGACTCGAATGGTCAAGTGAGTAATATAGATTTTACGTTTTATCTCGATTCTGATACTGCACTAGCAGTGGCAGCTGAAATGGCTGAACAATTGGAGTTGATAAATCATGATGTGGATTTCATAGCTGAATTTATTGAAATTTTTATAACAAAACTCATACCTGGTTGGAATCCCTTGCCTGATTATTCCTCAAATGGAGCGGTAAGTCTTTGTGATGGCCCCCCTATCCTTGAAAGTGTCGAATCATCCATAACATCTTCATGGGATTCAATGATAACTGGGGTTAACAGCGGGTTGGTCGAACTCGAACAAGGCATCTCCACTGGATTAGTGAGTTGTACTCAAAACGATTGTCTGCAATCGGATGGAGTTGGCTGGGCTGATGAAATTCCCTGTAGTCATATTTTTGATACTTGCCCATCTTCTCCCAGATTGCCTAATTTTGTGGACGTGTATTCACATGGTTCATTTGTCTCAGAGTTATTATTGGTTGAAGATTGTTCTACCACAATTGCTAAGGAGATTGATGGTCCCAATATTGATGAAAGCTCAAAAGACTCGAGCTGGTCGACTGCGGAACTAGAGGTCCACTGTTCTCCATATGTCGAAGACAAATTGGAAAGAAATGTTAGTGATGATGGAACCTTCATTCCCGTGGATTATTTTGTGAAGGACTCCGTCTTGTCATGGCCTGCTCAAAGTGAAGCATTTGATGTGATGAGCTTGATAAGCAGTTGTTCTTGGGTATCCTTAGCAGACAAGGATGTCGATGCCGAGCTCAAGTTGGAAGTCAATACTATCGAGGAGAAATATCAGCAGTTGTTCGAAGAGCTTTCTCGACTGAGAGAGGAAGCTGTAGAGGCTGCTAGAAAGAGATGGATTGCAAAGAAGAAACTGATTCATTGA 1998 40.74 MESPDSAVEKDPTGRYVRYDEVLGMGAFKTVYKAFDEVDGIEVAWNQVRIDSFLQSSEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKHVDMKAIKNWARQVLRGLVYLHSHNPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQRPTAQSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECRNPAQIYKKVTSGIKPASLAKVSDPQIMKFINKCLVPAQERLSAKDLLEDSFLQVENPKESKREPLQLPNLVPKSVNLLKSGPISIDIDIDHKQHSLSTCAGSNSGSPGFPVMELQTMNKNNEFRLCGNKNDDNSVALTLRIADSNGQVSNIDFTFYLDSDTALAVAAEMAEQLELINHDVDFIAEFIEIFITKLIPGWNPLPDYSSNGAVSLCDGPPILESVESSITSSWDSMITGVNSGLVELEQGISTGLVSCTQNDCLQSDGVGWADEIPCSHIFDTCPSSPRLPNFVDVYSHGSFVSELLLVEDCSTTIAKEIDGPNIDESSKDSSWSTAELEVHCSPYVEDKLERNVSDDGTFIPVDYFVKDSVLSWPAQSEAFDVMSLISSCSWVSLADKDVDAELKLEVNTIEEKYQQLFEELSRLREEAVEAARKRWIAKKKLIH 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52472380 52476806 + Sed0002281.1 Sed02g1777 705445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1777 665 Gene3D Transferase(Phosphotransferase) domain 1 100 280 - -
Sed02g1777 665 Coils Coil 621 655 - -
Sed02g1777 665 SUPERFAMILY Protein kinase-like (PK-like) 12 275 IPR011009 -
Sed02g1777 665 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 453 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed02g1777 665 SMART serkin_6 17 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1777 665 Gene3D - 355 417 - -
Sed02g1777 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1777 665 FunFam probable serine/threonine-protein kinase WNK9 100 279 - -
Sed02g1777 665 FunFam Probable serine/threonine-protein kinase WNK1 2 98 - -
Sed02g1777 665 Pfam Protein kinase domain 20 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1777 665 ProSiteProfiles Protein kinase domain profile. 17 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1777 665 CDD STKc_WNK 15 274 - -
Sed02g1777 665 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1777 Sed-Chr2:52472380 Sed05g0673 Sed-Chr5:5034761 4.30E-160 dispersed
Sed02g1777 Sed-Chr2:52472380 Sed02g1778 Sed-Chr2:52472380 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78836 PF00069 Pkinase 6.20E-54 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1777 K08867 - csv:101204101 1042.34