Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1778 ATGATCACCGAGCTCTTCACATCTGGGAGTTTGAGGCAATACCGTAAAAAGCATAAACATGTTGATATGAAAGCCATAAAGAATTGGGCACGACAGGTTCTTCGAGGTCTGGTCTATCTTCACAGTCACAACCCTCCCATTATTCATAGAGATTTGAAAGGTGATAATATTTTTATTAATGGAAATCATGGAGAAGTTAAAATTGGAGATCTTGGATTAGCAATTGTTATGCAGCGCCCTACCGCCCAAAGTGTAATTGGAACTCCCGAGTTCATGGCTCCTGAACTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTCACCTTTGAGTATCCATATAGTGAATGCAGAAATCCAGCTCAAATATATAAGAAAGTTACATCTGGTATCAAACCTGCTTCTCTTGCTAAGGTGAGTGATCCACAGATCATGAAGTTTATCAATAAATGTTTGGTTCCAGCGCAGGAGAGGTTGTCTGCAAAAGATCTTCTTGAAGATTCATTCCTTCAAGTTGAAAACCCAAAAGAATCAAAGCGTGAGCCCTTACAGTTACCCAACCTTGTTCCTAAATCAGTAAATTTGTTGAAGAGTGGGCCGATTTCCATCGATATTGACATTGACCATAAACAACATTCTTTAAGCACCTGTGCTGGAAGCAATAGTGGGAGTCCAGGCTTTCCAGTTATGGAACTTCAGACCATGAATAAGAACAATGAGTTTAGGCTTTGTGGAAATAAGAATGATGACAACTCTGTTGCATTAACCTTGCGTATTGCAGACTCGAATGGTCAAGTGAGTAATATAGATTTTACGTTTTATCTCGATTCTGATACTGCACTAGCAGTGGCAGCTGAAATGGCTGAACAATTGGAGTTGATAAATCATGATGTGGATTTCATAGCTGAATTTATTGAAATTTTTATAACAAAACTCATACCTGGTTGGAATCCCTTGCCTGATTATTCCTCAAATGGAGCGGTAAGTCTTTGTGATGGCCCCCCTATCCTTGAAAGTGTCGAATCATCCATAACATCTTCATGGGATTCAATGATAACTGGGGTTAACAGCGGGTTGGTCGAACTCGAACAAGGCATCTCCACTGGATTAGTGAGTTGTACTCAAAACGATTGTCTGCAATCGGATGGAGTTGGCTGGGCTGATGAAATTCCCTGTAGTCATATTTTTGATACTTGCCCATCTTCTCCCAGATTGCCTAATTTTGTGGACGTGTATTCACATGGTTCATTTGTCTCAGAGTTATTATTGGTTGAAGATTGTTCTACCACAATTGCTAAGGAGATTGATGGTCCCAATATTGATGAAAGCTCAAAAGACTCGAGCTGGTCGACTGCGGAACTAGAGGTCCACTGTTCTCCATATGTCGAAGACAAATTGGAAAGAAATGTTAGTGATGATGGAACCTTCATTCCCGTGGATTATTTTGTGAAGGACTCCGTCTTGTCATGGCCTGCTCAAAGTGAAGCATTTGATGTGATGAGCTTGATAAGCAGTTGTTCTTGGGTATCCTTAGCAGACAAGGATGTCGATGCCGAGCTCAAGTTGGAAGTCAATACTATCGAGGAGAAATATCAGCAGTTGTTCGAAGAGCTTTCTCGACTGAGAGAGGAAGCTGTAGAGGCTGCTAGAAAGAGATGGATTGCAAAGAAGAAACTGATTCATTGA 1716 40.79 MITELFTSGSLRQYRKKHKHVDMKAIKNWARQVLRGLVYLHSHNPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQRPTAQSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECRNPAQIYKKVTSGIKPASLAKVSDPQIMKFINKCLVPAQERLSAKDLLEDSFLQVENPKESKREPLQLPNLVPKSVNLLKSGPISIDIDIDHKQHSLSTCAGSNSGSPGFPVMELQTMNKNNEFRLCGNKNDDNSVALTLRIADSNGQVSNIDFTFYLDSDTALAVAAEMAEQLELINHDVDFIAEFIEIFITKLIPGWNPLPDYSSNGAVSLCDGPPILESVESSITSSWDSMITGVNSGLVELEQGISTGLVSCTQNDCLQSDGVGWADEIPCSHIFDTCPSSPRLPNFVDVYSHGSFVSELLLVEDCSTTIAKEIDGPNIDESSKDSSWSTAELEVHCSPYVEDKLERNVSDDGTFIPVDYFVKDSVLSWPAQSEAFDVMSLISSCSWVSLADKDVDAELKLEVNTIEEKYQQLFEELSRLREEAVEAARKRWIAKKKLIH 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52472380 52476806 + Sed0002281.2 Sed02g1778 705446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1778 571 SMART serkin_6 1 180 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1778 571 SUPERFAMILY Protein kinase-like (PK-like) 1 181 IPR011009 -
Sed02g1778 571 Pfam Protein kinase domain 1 179 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1778 571 FunFam probable serine/threonine-protein kinase WNK9 6 185 - -
Sed02g1778 571 Gene3D - 261 323 - -
Sed02g1778 571 Coils Coil 527 561 - -
Sed02g1778 571 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1778 571 Gene3D Transferase(Phosphotransferase) domain 1 6 186 - -
Sed02g1778 571 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 360 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed02g1778 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1778 Sed-Chr2:52472380 Sed05g0673 Sed-Chr5:5034761 5.90E-118 dispersed
Sed02g1777 Sed-Chr2:52472380 Sed02g1778 Sed-Chr2:52472380 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78837 PF00069 Pkinase 4.50E-38 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1778 K08867 - csv:101204101 862.448