Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1811 ATGATGAGAGGATATTGTTATTCCCAGCTTTTATTTGGTGTACTTGTTTGTGCTTACAATGTTGCTCCTTGCTTCTCTTTCCATCCCAAATCCTCCAGCTTTAACGTGTCCTCCGATTGGTCCCCAGCTGTGGCCACTTGGTACGGCAGTCCTCACGGTGCCGGGAGTGATGGAGGTTCATGTGGGTACGGAACAGCGGTGGAGAAAGCCCCGTTTTGGTCCTTAATTGCTGCCGGAGGGCCTTCCTTGTACAACTCGGGGAAGGCGTGCGGGGCTTGTTATGAGGTCAAGTGCGAATTAGACGCATGCTCCGGGAACCCGGTCACGGTGGTCATTACCGATAGCTGTCCAGGCGGATCCTGCGCATCCGACAAAGTCCACTTCGACCTTAGCGGCACTGCTTTAGGTGCTATGGCTACCACGGGCCTAGCCGATCACCTCCGCGATCTCGGCATTTTGCACATTCAATACAAGAGGGTGGAGTGCAACTACCCCGACACTTTCATCAACTTCATCGTGGACTCAGGCTCCAACCCCAACTACCTCGCGCTTCTTATCGAGTATGAAGACGGAGATGGAGATCTTGGCTCGGTGGACCTAAAACAGGACTCCTCCGCATCATGGATTCCAATGACGCAGTCATGGGGAGCAGTTTGGAAACTCGACTTTGGGTCCCCTCTTCAGCCTCCCTTTTCCCTTAGGCTCACTACACTCGACTCGGCCAAAACCCTCGTCGCCACCAACGTAATTCCAATTGGGTGGCAGCCCGGACAGACTTATACATCGCTCGTCAACTTCGATACCTAA 807 53.41 MMRGYCYSQLLFGVLVCAYNVAPCFSFHPKSSSFNVSSDWSPAVATWYGSPHGAGSDGGSCGYGTAVEKAPFWSLIAAGGPSLYNSGKACGACYEVKCELDACSGNPVTVVITDSCPGGSCASDKVHFDLSGTALGAMATTGLADHLRDLGILHIQYKRVECNYPDTFINFIVDSGSNPNYLALLIEYEDGDGDLGSVDLKQDSSASWIPMTQSWGAVWKLDFGSPLQPPFSLRLTTLDSAKTLVATNVIPIGWQPGQTYTSLVNFDT 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52702218 52703519 + Sed0012439.1 Sed02g1811 705479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1811 268 Pfam Expansin C-terminal domain 169 251 IPR007117 -
Sed02g1811 268 PANTHER EXPANSIN-B3 23 266 - -
Sed02g1811 268 Pfam Lytic transglycolase 77 157 IPR009009 -
Sed02g1811 268 Gene3D - 165 266 IPR036749 -
Sed02g1811 268 SUPERFAMILY Barwin-like endoglucanases 39 187 IPR036908 -
Sed02g1811 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 262 IPR007117 -
Sed02g1811 268 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
Sed02g1811 268 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576(InterPro)
Sed02g1811 268 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576(InterPro)
Sed02g1811 268 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576(InterPro)
Sed02g1811 268 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576(InterPro)
Sed02g1811 268 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576(InterPro)
Sed02g1811 268 CDD DPBB_EXPB_N 40 162 - -
Sed02g1811 268 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed02g1811 268 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed02g1811 268 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed02g1811 268 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed02g1811 268 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed02g1811 268 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed02g1811 268 SUPERFAMILY PHL pollen allergen 169 262 IPR036749 -
Sed02g1811 268 SMART dpbb_1 76 157 IPR007112 -
Sed02g1811 268 Gene3D - 26 163 IPR036908 -
Sed02g1811 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 167 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1811 Sed-Chr2:52702218 Sed04g0699 Sed-Chr4:5651659 2.30E-104 dispersed
Sed02g1811 Sed-Chr2:52702218 Sed05g1952 Sed-Chr5:32873225 1.40E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1811 - - - 0.0