Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1818 ATGGGGTTCGTCCACTTCGAAGACCACAACCAGGCCGTTTTGAGCTTCTTGGAACCCAATACCACCGCCACCGCCGCCACCGCTCCTGCCATGCCGCCTTCCACCTTCACTACGCCTCCTCCTCATGCCCACCTCCTTACCACGCCTTCTAATTCTTGGACGTCTAACGACCAGGTGGGAACCCTGGATCCAAAAGCCGGTAACCATGACAACTGCACTGGTAGCACCAGCGATGGCAGCAACTCATGGTGGAGAAACTCAAACTACGGGGATAAGAGTAAAGTGAAGGGCGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAAACAAGAAGCGACGTAGATGTTCTCGACGATGGCTATAAATGGAGAAAATATGGTCAAAAGGTCGTCAAGAATAGCCTTCATCCCAGAAGCTACTACCGTTGCACGCATAGCAACTGCCGAGTGAAGAAACGGGTGGAGCGACTGTCGGAGGATTGCCGGATGGTGATAACAACCTACGAGGGTAGACACAACCACACCCCTTGCGACGACTCCAATTCTTCTGACCACGAACCTTTTACATCCTTCTGA 579 52.68 MGFVHFEDHNQAVLSFLEPNTTATAATAPAMPPSTFTTPPPHAHLLTTPSNSWTSNDQVGTLDPKAGNHDNCTGSTSDGSNSWWRNSNYGDKSKVKGVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHTPCDDSNSSDHEPFTSF 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52807268 52809814 - Sed0016134.1 Sed02g1818 705486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1818 192 SMART WRKY_cls 118 177 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1818 192 MobiDBLite consensus disorder prediction 25 55 - -
Sed02g1818 192 Pfam WRKY DNA -binding domain 119 175 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1818 192 SUPERFAMILY WRKY DNA-binding domain 110 176 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1818 192 Gene3D WRKY domain 105 171 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1818 192 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 59 183 IPR044810 GO:0003700(InterPro)
Sed02g1818 192 MobiDBLite consensus disorder prediction 40 55 - -
Sed02g1818 192 ProSiteProfiles WRKY domain profile. 113 175 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1818 192 MobiDBLite consensus disorder prediction 173 192 - -
Sed02g1818 192 FunFam WRKY transcription factor 57 104 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1818 Sed-Chr2:52807268 Sed12g0016 Sed-Chr12:102659 3.60E-51 dispersed
Sed02g1818 Sed-Chr2:52807268 Sed02g1819 Sed-Chr2:52807268 7.40E-113 tandem
Sed12g0015 Sed-Chr12:102659 Sed02g1818 Sed-Chr2:52807268 4.60E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37698 PF03106 WRKY 1.30E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1818 - - - 0.0