Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1818 | ATGGGGTTCGTCCACTTCGAAGACCACAACCAGGCCGTTTTGAGCTTCTTGGAACCCAATACCACCGCCACCGCCGCCACCGCTCCTGCCATGCCGCCTTCCACCTTCACTACGCCTCCTCCTCATGCCCACCTCCTTACCACGCCTTCTAATTCTTGGACGTCTAACGACCAGGTGGGAACCCTGGATCCAAAAGCCGGTAACCATGACAACTGCACTGGTAGCACCAGCGATGGCAGCAACTCATGGTGGAGAAACTCAAACTACGGGGATAAGAGTAAAGTGAAGGGCGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAAACAAGAAGCGACGTAGATGTTCTCGACGATGGCTATAAATGGAGAAAATATGGTCAAAAGGTCGTCAAGAATAGCCTTCATCCCAGAAGCTACTACCGTTGCACGCATAGCAACTGCCGAGTGAAGAAACGGGTGGAGCGACTGTCGGAGGATTGCCGGATGGTGATAACAACCTACGAGGGTAGACACAACCACACCCCTTGCGACGACTCCAATTCTTCTGACCACGAACCTTTTACATCCTTCTGA | 579 | 52.68 | MGFVHFEDHNQAVLSFLEPNTTATAATAPAMPPSTFTTPPPHAHLLTTPSNSWTSNDQVGTLDPKAGNHDNCTGSTSDGSNSWWRNSNYGDKSKVKGVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHTPCDDSNSSDHEPFTSF | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 52807268 | 52809814 | - | Sed0016134.1 | Sed02g1818 | 705486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1818 | 192 | SMART | WRKY_cls | 118 | 177 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1818 | 192 | MobiDBLite | consensus disorder prediction | 25 | 55 | - | - | |
Sed02g1818 | 192 | Pfam | WRKY DNA -binding domain | 119 | 175 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1818 | 192 | SUPERFAMILY | WRKY DNA-binding domain | 110 | 176 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1818 | 192 | Gene3D | WRKY domain | 105 | 171 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1818 | 192 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 59 | 183 | IPR044810 | GO:0003700(InterPro) | |
Sed02g1818 | 192 | MobiDBLite | consensus disorder prediction | 40 | 55 | - | - | |
Sed02g1818 | 192 | ProSiteProfiles | WRKY domain profile. | 113 | 175 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1818 | 192 | MobiDBLite | consensus disorder prediction | 173 | 192 | - | - | |
Sed02g1818 | 192 | FunFam | WRKY transcription factor 57 | 104 | 178 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1818 | Sed-Chr2:52807268 | Sed12g0016 | Sed-Chr12:102659 | 3.60E-51 | dispersed | |
Sed02g1818 | Sed-Chr2:52807268 | Sed02g1819 | Sed-Chr2:52807268 | 7.40E-113 | tandem | |
Sed12g0015 | Sed-Chr12:102659 | Sed02g1818 | Sed-Chr2:52807268 | 4.60E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37698 | PF03106 | WRKY | 1.30E-24 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1818 | - | - | - | 0.0 |