Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1819 ATGGAAGGTGGATCCGAAGAAAGATTATCATGTGCAGGGCAGGTTCCCCCCATTAATTATCATCAAGTAGTTGAAGAAGTCTCCTTCCAGCAATCCAACAACAGCAGCAACCAGCAATTAATGGGGTTCGTCCACTTCGAAGACCACAACCAGGCCGTTTTGAGCTTCTTGGAACCCAATACCACCGCCACCGCCGCCACCGCTCCTGCCATGCCGCCTTCCACCTTCACTACGCCTCCTCCTCATGCCCACCTCCTTACCACGCCTTCTAATTCTTGGACGTCTAACGACCAGGTGGGAACCCTGGATCCAAAAGCCGGTAACCATGACAACTGCACTGGTAGCACCAGCGATGGCAGCAACTCATGGTGGAGAAACTCAAACTACGGGGATAAGAGTAAAGTGAAGGGCGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAAACAAGAAGCGACGTAGATGTTCTCGACGATGGCTATAAATGGAGAAAATATGGTCAAAAGGTCGTCAAGAATAGCCTTCATCCCAGAAGCTACTACCGTTGCACGCATAGCAACTGCCGAGTGAAGAAACGGGTGGAGCGACTGTCGGAGGATTGCCGGATGGTGATAACAACCTACGAGGGTAGACACAACCACACCCCTTGCGACGACTCCAATTCTTCTGACCACGAACCTTTTACATCCTTCTGA 699 51.22 MEGGSEERLSCAGQVPPINYHQVVEEVSFQQSNNSSNQQLMGFVHFEDHNQAVLSFLEPNTTATAATAPAMPPSTFTTPPPHAHLLTTPSNSWTSNDQVGTLDPKAGNHDNCTGSTSDGSNSWWRNSNYGDKSKVKGVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHTPCDDSNSSDHEPFTSF 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52807268 52809814 - Sed0016134.2 Sed02g1819 705487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1819 232 FunFam WRKY transcription factor 57 144 218 - -
Sed02g1819 232 ProSiteProfiles WRKY domain profile. 153 215 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1819 232 SUPERFAMILY WRKY DNA-binding domain 150 216 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1819 232 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 53 223 IPR044810 GO:0003700(InterPro)
Sed02g1819 232 SMART WRKY_cls 158 217 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1819 232 Gene3D WRKY domain 145 211 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1819 232 MobiDBLite consensus disorder prediction 213 232 - -
Sed02g1819 232 Pfam WRKY DNA -binding domain 159 215 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0062 Sed-Chr1:643492 Sed02g1819 Sed-Chr2:52807268 4.00E-36 dispersed
Sed02g1819 Sed-Chr2:52807268 Sed12g0015 Sed-Chr12:102659 4.30E-51 dispersed
Sed02g1818 Sed-Chr2:52807268 Sed02g1819 Sed-Chr2:52807268 7.40E-113 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37699 PF03106 WRKY 1.80E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1819 - - - 0.0