Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0039 ATGGGTAAGGAGAAGACTCACATCAGCATTGTGGTCATAGGCCATGTTGACTCTGGCAAGTCGACCACCACTGGTCATTTGATCTATAAGCTTGGAGGTATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCCTTCAAGTATGCTTGGGTGTTGGACAAATTAGAGGCTGAACGTGAGCGTGGCATTACCATTGACATTGCCCCGTGGAAGTTCGAGACCACCAAGTATTACTGCACAGTTATTGATGCTCCCGGTCATCGTGACTTTATTAAAAACATGATTACTGGTTTTGAAGCTGGTATTTCCAAGGATGGGCAGACCCGTGAACACGCACTTCTTGCCTTTACTCTTGGTGTTAAGCAAATGATTTGCTGCTGCAACAAGATGGATGCTACTACTCCCAAGTACTCTAAGGCAAGGTACGATGAAATTGTCAAAGAAGTTTCTTCCTACCTCAAGAAGGTCGGCTACAACCCTGACAAAATTGCCTTTGTGCCCATCTCTGGATTTGAGGGTGACAACATGATCGAACGATCCACCAACCTTGACTGGTACAAGGGCCCAACCCTTCTCGAAGCTCTTGACATGATCCAAGAGCCTAAGAGACCATCTGACAAGCCCCTTCGCCTTCCACTTCAGGATGTCTACAAAATTGGAGGCATTGGTACTGTCCTAGTGGGCCGTGTTGAAACTGGTATCATAAAACCTGGTATGGTAGTAACGTTTGCCCCAACTGGACTGACTACTGAAGTTAAGTCTGTTGAGATGCACCACGAAGCTCTACAAGAAGCTCTTCCTGGTGACAACGTGGGGTTCAATGTGAAGAATGTCGTCGTGAAGGATCTTAAGCGGGGCTATGTTGCTTCGAACTCCAAGGATGACCCTGCCAAGGAAGCTGCCAATTTCACCGCTCAAGTTATCATCATGAACCATCCTGGTCAAATTGGAAATGGTTATGCCCCAGTTCTCGACTGCCACACTTCTCACATTGCGGTGAAGTTTGCAGAGATTTTGACCAAGATTGACAGGCGATCTGGTAAAGAGCTTGAGAAGGAACCCAAGTTCTTGAAAAACGGAGATGCTGGATTTGTTAAGATGACCCCCACAAAACCCATGGTGGTGGAAACCTTCTCGGAGTACCCTCCTCTGGGACGATTTGCGGTGAGGGACATGCGACAGACTGTGGCTGTTGGTGTCATCAAGGCCGTTGAGAAGAAGGATGCAAGCGGCGCCAAGGTCACTAAGTCTGCAGCTAAGAAATCAGGCAAGTGA 1299 47.42 MGKEKTHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLEAERERGITIDIAPWKFETTKYYCTVIDAPGHRDFIKNMITGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIAFVPISGFEGDNMIERSTNLDWYKGPTLLEALDMIQEPKRPSDKPLRLPLQDVYKIGGIGTVLVGRVETGIIKPGMVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVVVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDASGAKVTKSAAKKSGK 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 284677 286164 - Sed0026565.1 Sed03g0039 705526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0039 432 FunFam Elongation factor 1-alpha 1 209 - -
Sed03g0039 432 Pfam GTP-eEF1A C-terminal domain-like 310 410 IPR054696 -
Sed03g0039 432 Pfam Elongation factor Tu domain 2 231 296 IPR004161 GO:0005525(InterPro)
Sed03g0039 432 Gene3D Translation factors 306 413 - -
Sed03g0039 432 CDD EF1_alpha 9 210 - -
Sed03g0039 432 Gene3D - 1 209 IPR027417 -
Sed03g0039 432 CDD EF1_alpha_III 306 409 - -
Sed03g0039 432 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g0039 432 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g0039 432 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g0039 432 FunFam Elongation factor 1-alpha 306 413 - -
Sed03g0039 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 232 IPR027417 -
Sed03g0039 432 FunFam Elongation factor 1-alpha 212 299 - -
Sed03g0039 432 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 309 412 IPR009001 -
Sed03g0039 432 PANTHER TRANSLATION FACTOR 4 410 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Sed03g0039 432 NCBIfam translation elongation factor EF-1 subunit alpha 1 416 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Sed03g0039 432 SUPERFAMILY Translation proteins 214 304 IPR009000 -
Sed03g0039 432 Gene3D Translation factors 212 299 - -
Sed03g0039 432 CDD EF1_alpha_II 213 303 - -
Sed03g0039 432 Pfam Elongation factor Tu GTP binding domain 5 205 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g0039 432 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 213 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed03g0039 432 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0039 Sed-Chr3:284677 Sed04g2076 Sed-Chr4:35072490 1.90E-233 dispersed
Sed01g2821 Sed-Chr1:23499968 Sed03g0039 Sed-Chr3:284677 2.80E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0039 K03231 - csv:101220517 823.542