Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0040 ATGGGGAAGAGAGGGGGCTGGTTGTCTGCTGTGAAGAAAGCATTTGCCCCTGAATCGAAGGAAAAGAAAGATCAGAAAACAAACAAACCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGGCATTGACGTCTGCAGAGCCAGCTTCATTGGGTGTGTCTGTTCTACCTATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAGAGCAAGCATGCTTACTCTGTTGCTATTGCCACTGCAGTGGCTGCCGAGGCCGCCGTTGCAGCGGCTCAGGCTGCAGCCAAGGTCGTTGAGCTCACCATTATCCCTCGTTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAAACTGCATTCCGTGGCTATATGGCTAGGAGGGCCCTGCGTGCATTAAGAGGGTTGGTGAGGTTGAAGACGCTGATACGACAAGGCCAATCTGTGAAAAGACAAGCGACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAATCACAGATTCGTGCAAGAAGAAATAGAATGTCAGAGGAGAATCAAGCTCTTCACAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTGCTTCTGCAAGCAATGAATGGGATGACAGTACCAAATCGAAGGAGGAAGTTGAAGCAAGATTAGTTTACAGGCAAGAAGCAACAACAAGAAGAGAAAGGGCGTTGGCGTATGCTTACTCTCATCAGAATTTATGGACGAATTCTTCAAAATCCGCAAACCCTACATTCATGGACTCGAACAATCCACGCTGGGGCTGGAGCTGGTTAGAGCGATGGATGGCCTCTCGTCCATGGGAGACCAGAAGCACCTTCGATTCTCATGAGCGTGGCTCTGTCAAGAGCGCCATCAGCCACGCAACCTGGATCGGAGACATTTCCAAATCTTACGCCCGTCGTGATCTCAATCTCGACATCAAGCCTTTTCCAATGACTCCGACGAGCCGAGCTCCGAGTCGCCAATCGCCAGCGTCCCTATCTGCAGGGAGGAAATTGAAGCCGGCGAGTCCAAGAGGGTTCGGATGGGGCGGAGACGGGGATTCCAGAAGCGGATTGAGCGTGAAATCGGAGCGATACCAGCGACATAGCATCGCGGGATCATCGGTGCATGAGGAGGAAAGCTTCACGAGTTCGTCGTCGGTTCCAAGCTACATGGCGTCCACGGAAGCGGCTAGGGCTAGGTCCCGGCTGTCGAGTCCGATGGGATCAGAGACTCGGGAGAAAGGAGCGACGAGTGGCAGCGTAAAGAAGCGGCTCTCGTTCCCTGCCTCGCCGACGGCGGTGGCGGCGAGGAGACAATCTGGCGAGAGCAGATAG 1365 51.94 MGKRGGWLSAVKKAFAPESKEKKDQKTNKPKKRWFGKPKKLEALTSAEPASLGVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAKVVELTIIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKTLIRQGQSVKRQATTTLRCMQTLARVQSQIRARRNRMSEENQALHRQLQQKHERELERLTASASNEWDDSTKSKEEVEARLVYRQEATTRRERALAYAYSHQNLWTNSSKSANPTFMDSNNPRWGWSWLERWMASRPWETRSTFDSHERGSVKSAISHATWIGDISKSYARRDLNLDIKPFPMTPTSRAPSRQSPASLSAGRKLKPASPRGFGWGGDGDSRSGLSVKSERYQRHSIAGSSVHEEESFTSSSSVPSYMASTEAARARSRLSSPMGSETREKGATSGSVKKRLSFPASPTAVAARRQSGESR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 290565 294488 + Sed0014791.1 Sed03g0040 705527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0040 454 MobiDBLite consensus disorder prediction 324 454 - -
Sed03g0040 454 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
Sed03g0040 454 MobiDBLite consensus disorder prediction 181 215 - -
Sed03g0040 454 Gene3D iswi atpase 111 149 - -
Sed03g0040 454 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Sed03g0040 454 Pfam Protein of unknown function (DUF4005) 382 444 IPR025064 -
Sed03g0040 454 ProSiteProfiles IQ motif profile. 114 142 - -
Sed03g0040 454 PANTHER IQ-DOMAIN 5-RELATED 6 422 - -
Sed03g0040 454 MobiDBLite consensus disorder prediction 15 38 - -
Sed03g0040 454 MobiDBLite consensus disorder prediction 385 425 - -
Sed03g0040 454 Coils Coil 178 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2818 Sed-Chr1:23397597 Sed03g0040 Sed-Chr3:290565 3.00E-187 dispersed
Sed03g0040 Sed-Chr3:290565 Sed03g0042 Sed-Chr3:290565 6.00E-238 dispersed
Sed03g0040 Sed-Chr3:290565 Sed03g0041 Sed-Chr3:290565 8.50E-176 tandem
Sed09g0603 Sed-Chr9:7017003 Sed03g0040 Sed-Chr3:290565 6.30E-31 transposed
Sed01g2817 Sed-Chr1:23397597 Sed03g0040 Sed-Chr3:290565 3.00E-187 wgd
Sed14g0426 Sed-Chr14:4402517 Sed03g0040 Sed-Chr3:290565 1.10E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0040 - - - 0.0