Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0040 ATGGGGAAGAGAGGGGGCTGGTTGTCTGCTGTGAAGAAAGCATTTGCCCCTGAATCGAAGGAAAAGAAAGATCAGAAAACAAACAAACCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGGCATTGACGTCTGCAGAGCCAGCTTCATTGGGTGTGTCTGTTCTACCTATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAGAGCAAGCATGCTTACTCTGTTGCTATTGCCACTGCAGTGGCTGCCGAGGCCGCCGTTGCAGCGGCTCAGGCTGCAGCCAAGGTCGTTGAGCTCACCATTATCCCTCGTTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAAACTGCATTCCGTGGCTATATGGCTAGGAGGGCCCTGCGTGCATTAAGAGGGTTGGTGAGGTTGAAGACGCTGATACGACAAGGCCAATCTGTGAAAAGACAAGCGACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAATCACAGATTCGTGCAAGAAGAAATAGAATGTCAGAGGAGAATCAAGCTCTTCACAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTGCTTCTGCAAGCAATGAATGGGATGACAGTACCAAATCGAAGGAGGAAGTTGAAGCAAGATTAGTTTACAGGCAAGAAGCAACAACAAGAAGAGAAAGGGCGTTGGCGTATGCTTACTCTCATCAGAATTTATGGACGAATTCTTCAAAATCCGCAAACCCTACATTCATGGACTCGAACAATCCACGCTGGGGCTGGAGCTGGTTAGAGCGATGGATGGCCTCTCGTCCATGGGAGACCAGAAGCACCTTCGATTCTCATGAGCGTGGCTCTGTCAAGAGCGCCATCAGCCACGCAACCTGGATCGGAGACATTTCCAAATCTTACGCCCGTCGTGATCTCAATCTCGACATCAAGCCTTTTCCAATGACTCCGACGAGCCGAGCTCCGAGTCGCCAATCGCCAGCGTCCCTATCTGCAGGGAGGAAATTGAAGCCGGCGAGTCCAAGAGGGTTCGGATGGGGCGGAGACGGGGATTCCAGAAGCGGATTGAGCGTGAAATCGGAGCGATACCAGCGACATAGCATCGCGGGATCATCGGTGCATGAGGAGGAAAGCTTCACGAGTTCGTCGTCGGTTCCAAGCTACATGGCGTCCACGGAAGCGGCTAGGGCTAGGTCCCGGCTGTCGAGTCCGATGGGATCAGAGACTCGGGAGAAAGGAGCGACGAGTGGCAGCGTAAAGAAGCGGCTCTCGTTCCCTGCCTCGCCGACGGCGGTGGCGGCGAGGAGACAATCTGGCGAGAGCAGATAG 1365 51.94 MGKRGGWLSAVKKAFAPESKEKKDQKTNKPKKRWFGKPKKLEALTSAEPASLGVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAKVVELTIIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKTLIRQGQSVKRQATTTLRCMQTLARVQSQIRARRNRMSEENQALHRQLQQKHERELERLTASASNEWDDSTKSKEEVEARLVYRQEATTRRERALAYAYSHQNLWTNSSKSANPTFMDSNNPRWGWSWLERWMASRPWETRSTFDSHERGSVKSAISHATWIGDISKSYARRDLNLDIKPFPMTPTSRAPSRQSPASLSAGRKLKPASPRGFGWGGDGDSRSGLSVKSERYQRHSIAGSSVHEEESFTSSSSVPSYMASTEAARARSRLSSPMGSETREKGATSGSVKKRLSFPASPTAVAARRQSGESR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 290565 294488 + Sed0014791.1 Sed03g0040 705527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0040 454 MobiDBLite consensus disorder prediction 324 454 - -
Sed03g0040 454 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
Sed03g0040 454 MobiDBLite consensus disorder prediction 181 215 - -
Sed03g0040 454 Gene3D iswi atpase 111 149 - -
Sed03g0040 454 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Sed03g0040 454 Pfam Protein of unknown function (DUF4005) 382 444 IPR025064 -
Sed03g0040 454 ProSiteProfiles IQ motif profile. 114 142 - -
Sed03g0040 454 PANTHER IQ-DOMAIN 5-RELATED 6 422 - -
Sed03g0040 454 MobiDBLite consensus disorder prediction 15 38 - -
Sed03g0040 454 MobiDBLite consensus disorder prediction 385 425 - -
Sed03g0040 454 Coils Coil 178 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0040 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2818 Sed-Chr1:23397597 Sed03g0040 Sed-Chr3:290565 3.00E-187 dispersed
Sed03g0040 Sed-Chr3:290565 Sed03g0042 Sed-Chr3:290565 6.00E-238 dispersed
Sed03g0040 Sed-Chr3:290565 Sed03g0041 Sed-Chr3:290565 8.50E-176 tandem
Sed09g0603 Sed-Chr9:7017003 Sed03g0040 Sed-Chr3:290565 6.30E-31 transposed
Sed01g2817 Sed-Chr1:23397597 Sed03g0040 Sed-Chr3:290565 3.00E-187 wgd
Sed14g0426 Sed-Chr14:4402517 Sed03g0040 Sed-Chr3:290565 1.10E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2817 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed01g2818 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed03g0040 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0042 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0041 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed03g0043 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed07g2286 . 84 258 IQD Protein Family AT2G26410 50.6 1.9e-38 158.3
Sed08g1171 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed08g1170 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed12g1498 . 1 398 IQD Protein Family AT3G22190 56.3 4.7e-88 322.8
Sed13g1870 . 1 437 IQD Protein Family AT2G26180 61.0 3.3e-118 422.9
Sed13g1871 . 11 425 IQD Protein Family AT2G26180 61.4 1.1e-110 397.9
Sed11g1830 . 1 435 IQD Protein Family AT2G26180 55.2 7.0e-100 362.1
Sed10g0264 . 1 271 IQD Protein Family AT2G33990 52.3 3.5e-65 246.1
Sed14g1502 . 1 281 IQD Protein Family AT2G33990 51.2 1.5e-63 240.7
Sed14g1502 . 1 237 IQD Protein Family AT3G15050 52.3 1.4e-58 224.2
Sed04g1560 . 43 216 IQD Protein Family AT3G15050 62.7 8.0e-54 208.4
Sed09g0603 . 1 499 IQD Protein Family AT4G00820 51.5 9.8e-115 411.8
Sed09g0603 . 1 499 IQD Protein Family AT1G01110 50.5 7.7e-112 402.1
Sed09g1621 . 1 396 IQD Protein Family AT3G16490 52.7 9.5e-75 278.5
Sed07g1415 . 1 393 IQD Protein Family AT3G16490 51.4 1.0e-68 258.5
Sed08g0818 . 1 356 IQD Protein Family AT3G16490 52.6 6.8e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40