Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0060 ATGGAGATTACATACTCATCGCCCAGCGCCACTGGTCTTTCTTCCTCGACTCGACCGCCGGTCAAGGTCATTCCATTGCAGCACCCTAGCACGGCGGCCTCGTCCTCGCCGGCCGGTGGTTCTTACGCCGGCGCTCTGCTCAAAACATGGACGGCGAAGGTCCGGAGGATGACTTGGATTCACTGGATGGAGCTTTTGCTACCTTGCTCCCGTTGGATTAGAACGTATCAATGGCGGGAGTACTTACAGAGCGATCTCTTGTCCGGGATTACCATTGGCATCATGCTCGTTCCGCAGGCGATGTCTTATGCAAAATTAGCGGGGCTTCAACCGATATATGGACTTTATTCTGGTTTTCTCCCGTTGTTCGTCTATGCATTTTTTGGTTCTTCTCGTCAGCTTGCAGTTGGTCCAGTAGCATTGGTTTCTCTCCTCGTTTCTAATGTCTTGGGTGGAATTGTCAATTCATCTGAGCAACTATATACTGAGCTTGCCATATTATTGGCACTCATGGTTGGAATATTGGAATGCGTGATGGGGCTCCTGAGGCTTGGATGGCTTATTCGCTTTATCAGTCACTCTGTAATCTCTGGCTTTACCACTGCTTCTGCTATTGTGATTGGGTTATCCCAAGTGAAATACTTTCTGGGGTACGATGTATCAAGAAGTAGCAAAATTGTGCCTCTAATTGAGAGCATTATAGCCGGAGTAGATGGGTTCTTATGGGCACCTTTCATAATGGGATCAGTTATCCTTGCGGTACTTCAAATCATGAAGCATTTGGGGAAAACAAGGAAGCACTTACGGTTTCTTAGAGTTGCTGGTCCCCTTACAGCAGTTGTTATGGGTACAACATTGGTGAAAGTATTGAATCTACCTTCCATTTCTTTGGTTGGAGATATTCCCCAAGGCCTTCCAAAGTTTTCTGTTCCTAAAAGATTTGAGCATGTGAAGTCGTTGATTCCAACTGCCTTTCTGATAACAGGAGTTGCTATATTGGAATCTGTTGGCATTGCAAAAGCATTAGCAGCTAAAAATGGGTACGAGTTAGATTCAAATCAGGAGTTATTTGGTCTTGGAGTAGCTAATGTTGTTGGCTCATTTTTTTCAGCATATCCCACGACAGGCTCTTTCTCAAGATCAGCAGTGAACCATGAAAGTGGAGCAAAAACTAGCCTGTCTCAGATTGTTACAGGAATTATTATGGGCGGTGCCCTTCTTTTTTTGACTCCACTGTTTGAACACATACCTCAGTGCGCTTTGGCTGCCATTGTGATTTCTGCTGTTATAACTTTGGTGGATTACGACGAGGCTATATTTTTGTGGCGTATAGATAAGAAAGATTTTCTACTTTGGGTGATTACTGCCATTGCTACATTGTTCCTCGGTATTGAGATTGGTGTCTTAATTGGGGTGGGCGTTTCACTGGTATTTGTCATTCACGAATCTGCAAATCCACATATGGCTGTATTGGGGCGTCTTCCAGGCACCACTGTGTATAGAAATGTTCAACAGTATCCCGAGGCATATACTTACAATGGAATTGTGATCGTTCGGATTGATGCACCAATTTATTTTGCGAACACGAGTTTCATCAAAGACAGGTTACGTGAATATGAAGTTGAAGTGGATCGATATACTGGTCGTGGACCCGATGTTGAAAGAGTCTATTTCGTGATTATAGAGATGGCACCTGTTACTTATGTAGATTCGAGTGCTGTCCAGGCTCTAAAAGATTTGTATCAAGAGTATAAAATTCGCGATATTCAGATTGCCATTTCCAACCCGAATCGAGACGTTTTGCTTACATTTTCAAGATCGGGCGTCGTTGAGCTTATCGGCAAGGAGTGGTTTTTTGTAAGAGTTCATGATGCAATTCAAGTTTGTCTTCAGCATGTGGAGAGCTTTAAAGGAACAACCAAGAGAACTGATTCTTCTCCAAAAGATGGATCAAGCTTTCTCCAAAGGTTAGTGAAGTCCAGAAGTGAGAATTTATCAATGAGCCAATTGGAGTCAGGCTTCCAAAAGCTTCCAAGTTCCAATGAAATCAACTCTCAATTGGAACCATTACTATCTCAAAATCCTTGA 2088 43.49 MEITYSSPSATGLSSSTRPPVKVIPLQHPSTAASSSPAGGSYAGALLKTWTAKVRRMTWIHWMELLLPCSRWIRTYQWREYLQSDLLSGITIGIMLVPQAMSYAKLAGLQPIYGLYSGFLPLFVYAFFGSSRQLAVGPVALVSLLVSNVLGGIVNSSEQLYTELAILLALMVGILECVMGLLRLGWLIRFISHSVISGFTTASAIVIGLSQVKYFLGYDVSRSSKIVPLIESIIAGVDGFLWAPFIMGSVILAVLQIMKHLGKTRKHLRFLRVAGPLTAVVMGTTLVKVLNLPSISLVGDIPQGLPKFSVPKRFEHVKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANVVGSFFSAYPTTGSFSRSAVNHESGAKTSLSQIVTGIIMGGALLFLTPLFEHIPQCALAAIVISAVITLVDYDEAIFLWRIDKKDFLLWVITAIATLFLGIEIGVLIGVGVSLVFVIHESANPHMAVLGRLPGTTVYRNVQQYPEAYTYNGIVIVRIDAPIYFANTSFIKDRLREYEVEVDRYTGRGPDVERVYFVIIEMAPVTYVDSSAVQALKDLYQEYKIRDIQIAISNPNRDVLLTFSRSGVVELIGKEWFFVRVHDAIQVCLQHVESFKGTTKRTDSSPKDGSSFLQRLVKSRSENLSMSQLESGFQKLPSSNEINSQLEPLLSQNP 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 356293 364293 + Sed0004589.1 Sed03g0060 705547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0060 695 Pfam STAS domain 506 625 IPR002645 -
Sed03g0060 695 Gene3D STAS domain 485 632 IPR036513 -
Sed03g0060 695 FunFam Sulfate transporter 31 485 632 - -
Sed03g0060 695 CDD STAS_SulP_like_sulfate_transporter 506 622 - -
Sed03g0060 695 SUPERFAMILY SpoIIaa-like 507 629 IPR036513 -
Sed03g0060 695 NCBIfam sulfate permease 68 625 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0060 695 PANTHER SULFATE TRANSPORTER 57 631 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed03g0060 695 ProSitePatterns SLC26A transporters signature. 111 132 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Sed03g0060 695 ProSiteProfiles STAS domain profile. 505 629 IPR002645 -
Sed03g0060 695 MobiDBLite consensus disorder prediction 671 695 - -
Sed03g0060 695 Pfam Sulfate permease family 82 455 IPR011547 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0060 Sed-Chr3:356293 Sed03g0853 Sed-Chr3:5181786 1.80E-105 dispersed
Sed01g2777 Sed-Chr1:22971448 Sed03g0060 Sed-Chr3:356293 1.40E-278 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0060 K18059 - csv:101202870 1204.5