Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0062 ATGGAGCATCCCGCCGGAATTTGGAGCCAGGCTAGGCCATTTGTAGCAGTCATTCTTCAGCAGTTCATCTCTGCCGGAATGGTTATCATTTCCAAGTTTGCTCTCAACCAGGGACTCAACCAACACGTCTTAGTCGTTTACCGCTACGCCATTGCCACCATTGTCGTAGCTCCTTTCGCTCTCGTCTTTGAAAGGTTTCTCTCCTTTCTCCTCTTTTCTCTTTATTTTTGGAGTTTTATTGACGGTGTTAATGACAGGAAAGTGAGACCGAAGATGACTTGGTCGGTTTTTGGGAAGATCGTATTGCTCGGTTTATTGGAGCCTGCACTCGACCAAAACTTGTATTACACAGGCATGAAGTACACTACAGCAACTTTCGCATCGGCTATGACCAATGTGGTCCCTGGCCTTATATTCCTCATGGCTTGGGTTGTCCGGCTGGAGAAGGTTAATGTAAGGCAATTGTCAAGCCAGGCCAAGATATTAGGGACAGTGGTGGCTGTGGGAGGCGCAATGATAATGACTATGGTAAGAGGACCAATTCTGAATCTGCCATGGACAAATCACGGCCTCCATCAAGCTTCTGCAACTACTGTCAACCAGCAAGATATTCTCAAGGGTGCTCTCATGATCACTACAGGCTGTATTTTTTGGTCTTTTTTTACTGTTCTTCAGGCAATTACAATAAAAGTATACCCGGCACAGCTCTCCTTAACAGCATTGATATGCTTCACGGGCACCTTGCAAGCTTCAGTGATAGCTTTGGGAATGGAAGGGCGCAAACCTGCTGCCTGGTCATTACATTTAGATTCCACACTCTTAGCTCCTTTATACAGTGGAATTATGTCTTCTGGGGTTTCATATACTATTCAAGCAGCAATAATGAAAACAAAAGGCCCAGTTTTTGCAAGTACATTTAGTCCCCTGAGCATGGTCATTGTTGCAATCATTAGCTCGTTTGCATTATCCGAGATACTATACTTCGGAAGGGTTCTTGGAGCAGCTGTAATTATTACAGGTCTTTATTTAGTTCTATGGGGTAAAATAAAGGATCAGACTCCCTACAATTCAGATAGTGAGAAGATAGCCCCATCTGATCAGAAACTGACTGTCGTTACTGACAAACCTAAGACTTTAGATAAAGAACTTGTAATTGATCTTGCTAGAATAAAGACGGTGGATGATTCGGTTTGA 1194 43.63 MEHPAGIWSQARPFVAVILQQFISAGMVIISKFALNQGLNQHVLVVYRYAIATIVVAPFALVFERFLSFLLFSLYFWSFIDGVNDRKVRPKMTWSVFGKIVLLGLLEPALDQNLYYTGMKYTTATFASAMTNVVPGLIFLMAWVVRLEKVNVRQLSSQAKILGTVVAVGGAMIMTMVRGPILNLPWTNHGLHQASATTVNQQDILKGALMITTGCIFWSFFTVLQAITIKVYPAQLSLTALICFTGTLQASVIALGMEGRKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAIMKTKGPVFASTFSPLSMVIVAIISSFALSEILYFGRVLGAAVIITGLYLVLWGKIKDQTPYNSDSEKIAPSDQKLTVVTDKPKTLDKELVIDLARIKTVDDSV 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 378573 381257 - Sed0012702.1 Sed03g0062 705549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0062 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 175 - -
Sed03g0062 397 PANTHER WAT1-RELATED PROTEIN 15 358 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed03g0062 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 269 349 - -
Sed03g0062 397 Pfam EamA-like transporter family 206 345 IPR000620 GO:0016020(InterPro)
Sed03g0062 397 Pfam EamA-like transporter family 17 174 IPR000620 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0062 Sed-Chr3:378573 Sed07g2469 Sed-Chr7:40415188 1.70E-111 dispersed
Sed03g0062 Sed-Chr3:378573 Sed03g0063 Sed-Chr3:407753 1.90E-102 tandem
Sed01g2771 Sed-Chr1:22940492 Sed03g0062 Sed-Chr3:378573 2.00E-95 wgd
Sed14g0458 Sed-Chr14:4628729 Sed03g0062 Sed-Chr3:378573 2.60E-98 wgd
Sed03g0062 Sed-Chr3:378573 Sed04g2820 Sed-Chr4:40128616 6.40E-103 wgd
Sed03g0062 Sed-Chr3:378573 Sed07g2468 Sed-Chr7:40394864 4.40E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0062 - - - 0.0